JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS48_chr4_151272161_151296862	0/0	c0001	987	113	12	24	59	3	15	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	c0002	987	103	31	14	49	2	7	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	1/0	c0003	987	103	30	12	50	2	8	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/1	c0004	992	90	5	21	46	5	12	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	c0005	987	15	15	0	0	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	c0006	987	2	2	0	0	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	c0007	987	1	0	1	0	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS48_chr4_151272161_151296862	0/0	c0008	987	1	1	0	0	0	0	copy fasta	PRSS48	chr4	151272161	151296862
PRSS50_chr3_46707117_46722869	1/1	c0001	1158	244	21	56	125	11	29	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0002	1158	110	37	15	48	1	9	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0003	1158	13	10	2	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0004	1161	10	0	3	1	3	3	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0005	1158	8	8	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0006	1158	5	3	1	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0007	1158	4	4	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0008	1158	4	3	1	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0009	1158	3	0	0	3	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0010	1158	3	0	0	3	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0011	1158	2	2	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0012	1161	2	0	2	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0013	1158	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0014	1161	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0015	1158	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0016	1158	1	0	0	0	0	1	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0017	1158	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0018	1158	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0019	1158	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0020	1158	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0021	1158	1	0	0	1	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0022	1158	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0023	1158	1	1	0	0	0	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS50_chr3_46707117_46722869	0/0	c0024	1158	1	0	0	0	1	0	copy fasta	PRSS50	chr3	46707117	46722869
PRSS53_chr16_31078437_31093943	1/1	c0001	1662	94	27	27	23	8	7	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0002	1662	94	33	25	23	7	6	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0003	1662	87	2	15	69	0	1	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0004	1662	20	0	0	0	0	20	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0005	1662	16	16	0	0	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0006	1662	3	0	0	3	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0007	1662	1	0	0	0	1	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0008	1662	1	0	1	0	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0009	1662	1	0	0	1	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS53_chr16_31078437_31093943	0/0	c0010	1626	1	0	0	1	0	0	copy fasta	PRSS53	chr16	31078437	31093943
PRSS54_chr16_58274997_58300025	0/0	c0001	1188	192	63	24	76	10	19	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	1/1	c0002	1188	123	8	23	76	5	9	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0003	1188	47	5	7	29	1	5	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0004	1188	42	5	11	20	2	4	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0005	1188	2	0	1	0	0	1	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0006	1188	2	2	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0008	1188	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025