JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRSS54_chr16_58274997_58300025	0/0	c0009	1188	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS54_chr16_58274997_58300025	0/0	c0010	1188	1	1	0	0	0	0	copy fasta	PRSS54	chr16	58274997	58300025
PRSS55_chr8_10520532_10543819	0/0	c0001	1059	140	17	17	86	2	18	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0002	1059	94	11	17	46	6	14	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0003	1059	93	3	20	61	2	7	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0004	1059	41	18	6	16	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0005	1059	20	19	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0006	1059	17	12	5	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0007	1059	11	0	1	9	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/1	c0008	1059	9	0	6	0	2	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0009	1059	8	0	3	1	2	2	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	1/0	c0010	1059	7	6	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0011	1059	5	5	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0012	1059	4	0	3	0	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0013	1059	3	0	1	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0014	1059	3	3	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0015	1059	2	2	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0016	1059	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0017	1059	2	0	0	0	0	2	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0018	1059	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0019	1059	2	2	0	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0020	1059	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0021	1059	2	0	0	2	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0022	1059	1	0	0	0	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0023	1059	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0024	1059	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0025	1059	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0026	1059	1	0	1	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0027	1059	1	0	1	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0028	1059	1	0	1	0	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0029	1059	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0030	1059	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0031	1059	1	0	0	0	0	1	copy fasta	PRSS55	chr8	10520532	10543819
PRSS55_chr8_10520532_10543819	0/0	c0032	1059	1	0	0	1	0	0	copy fasta	PRSS55	chr8	10520532	10543819
PRSS56_chr2_232515388_232530716	0/1	c0001	1812	289	33	41	175	12	27	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0002	1812	68	39	5	11	2	11	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	1/0	c0003	1812	41	15	14	6	2	3	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0004	1812	7	0	0	7	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0005	1812	6	3	3	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0006	1812	5	1	1	0	0	3	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0007	1812	3	0	0	3	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0008	1812	2	0	0	2	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0009	1812	2	2	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0010	1812	2	2	0	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0011	1812	2	0	1	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0012	1812	1	0	0	0	0	1	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0013	1812	1	0	0	1	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0014	1812	1	0	0	0	0	1	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0015	1812	1	0	1	0	0	0	copy fasta	PRSS56	chr2	232515388	232530716
PRSS56_chr2_232515388_232530716	0/0	c0016	1812	1	0	0	0	0	1	copy fasta	PRSS56	chr2	232515388	232530716