JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARVCF_chr22_19964896_20021823	0/0	c0022	2889	1	0	0	0	1	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0023	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0024	2889	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0025	2889	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0026	2889	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0027	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0028	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0029	2889	1	0	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0030	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0031	2889	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0032	2889	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0033	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0034	2889	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0035	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0036	2889	1	1	0	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0037	2889	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0038	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0039	2889	1	0	1	0	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0040	2889	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0041	2889	1	0	0	0	0	1	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0042	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARVCF_chr22_19964896_20021823	0/0	c0043	2889	1	0	0	1	0	0	copy fasta	ARVCF	chr22	19964896	20021823
ARX_chrX_24998694_25020965	1/1	c0001	1689	294	74	51	124	11	32	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	c0002	1689	3	0	3	0	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	c0003	1689	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	c0004	1690	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
ARX_chrX_24998694_25020965	0/0	c0005	1688	1	0	0	1	0	0	copy fasta	ARX	chrX	24998694	25020965
AR_chrX_67539021_67735619	0/0	c0001	2760	18	0	2	13	1	2	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0002	2772	12	0	3	6	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0003	2766	10	0	5	4	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0004	2769	10	1	1	6	1	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0005	2760	6	3	0	0	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0006	2757	6	0	1	2	0	3	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	1/0	c0007	2763	6	0	0	5	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0008	2754	5	4	0	0	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/1	c0009	2766	5	0	1	2	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0010	2763	5	2	0	2	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0011	2757	4	3	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0012	2763	4	1	3	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0013	2757	4	4	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0014	2769	4	0	0	3	1	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0015	2748	3	3	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0016	2748	3	1	0	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0017	2757	3	3	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0018	2775	3	0	1	2	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0019	2778	3	0	1	1	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0020	2754	2	0	2	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0021	2745	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0022	2751	2	2	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0023	2751	2	0	0	1	1	0	copy fasta	AR	chrX	67539021	67735619