JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRUNE2_chr9_76606376_76911114	0/0	c0015	9267	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0016	9252	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0017	9252	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0018	9264	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0019	9264	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0020	9264	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0021	9255	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0022	9267	2	2	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0023	9252	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0024	9264	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0025	9252	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0026	9252	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0027	9264	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0028	9264	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0029	9264	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0030	9264	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0031	9267	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0032	9264	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0033	9252	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0034	9252	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0035	9252	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0036	9252	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0037	9264	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0038	9264	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0039	9264	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0040	9264	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0041	9264	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0042	9264	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0043	9264	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0044	9264	1	0	0	1	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0045	9264	1	0	0	0	0	1	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0046	9264	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0047	9264	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0048	9264	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0049	9261	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0050	9261	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0051	9267	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0052	9267	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0053	9267	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0054	9267	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0055	9267	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0056	9267	1	0	1	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0057	9267	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRUNE2_chr9_76606376_76911114	0/0	c0058	9264	1	1	0	0	0	0	copy fasta	PRUNE2	chr9	76606376	76911114
PRXL2A_chr10_80403551_80442115	1/1	c0001	690	297	91	72	82	12	38	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2A_chr10_80403551_80442115	0/0	c0002	690	3	3	0	0	0	0	copy fasta	PRXL2A	chr10	80403551	80442115
PRXL2B_chr1_2581777_2596468	0/1	c0001	597	411	97	72	183	14	44	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	c0002	597	1	0	0	1	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2B_chr1_2581777_2596468	0/0	c0003	597	1	1	0	0	0	0	copy fasta	PRXL2B	chr1	2581777	2596468
PRXL2C_chr9_96634577_96660317	1/1	c0001	681	238	45	59	89	14	29	copy fasta	PRXL2C	chr9	96634577	96660317