JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PRXL2C_chr9_96634577_96660317	0/0	c0002	681	32	29	3	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	c0003	681	16	14	2	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	c0004	681	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	c0005	681	1	1	0	0	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	c0006	681	1	0	0	0	0	1	copy fasta	PRXL2C	chr9	96634577	96660317
PRXL2C_chr9_96634577_96660317	0/0	c0007	681	1	0	0	1	0	0	copy fasta	PRXL2C	chr9	96634577	96660317
PRX_chr19_40388768_40418378	0/0	c0001	4386	108	15	29	43	9	12	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0002	4386	50	34	4	5	3	4	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/1	c0003	4386	47	12	12	19	2	1	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0004	4386	23	2	8	1	3	9	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0005	4386	12	0	0	6	0	6	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0006	4386	10	9	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0007	4383	6	0	6	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	1/0	c0008	4386	5	1	2	0	1	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0009	4383	4	4	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0010	4386	3	0	0	3	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0011	4386	3	3	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0012	4386	3	3	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0013	4386	3	0	0	0	0	3	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0014	4386	3	3	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0015	4386	2	0	0	2	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0016	4386	2	0	0	2	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0017	4386	2	2	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0018	4383	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0019	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0020	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0021	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0022	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0023	4386	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0024	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0025	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0026	4386	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0027	4386	1	0	1	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0028	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0029	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0030	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0031	4386	1	0	0	0	0	1	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0032	4371	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0033	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0034	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0035	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0036	4386	1	0	0	1	0	0	copy fasta	PRX	chr19	40388768	40418378
PRX_chr19_40388768_40418378	0/0	c0037	4386	1	1	0	0	0	0	copy fasta	PRX	chr19	40388768	40418378
PRY2_chrY_22066756_22101007	0/0	c0001	444	4	0	0	4	0	0	copy fasta	PRY2	chrY	22066756	22101007
PRY_chrY_22485397_22519637	0/0	c0001	444	111	15	14	65	4	13	copy fasta	PRY	chrY	22485397	22519637
PRY_chrY_22485397_22519637	0/0	c0002	444	8	0	5	0	1	2	copy fasta	PRY	chrY	22485397	22519637
PSAPL1_chr4_7425285_7439930	0/0	c0001	1566	175	21	26	102	2	24	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0002	1566	78	11	20	35	3	9	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/1	c0003	1566	42	7	9	18	3	4	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0004	1566	31	9	7	11	1	3	copy fasta	PSAPL1	chr4	7425285	7439930