JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSAPL1_chr4_7425285_7439930	0/0	c0005	1566	24	1	8	8	3	4	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0006	1566	24	0	4	20	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0007	1566	12	11	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0008	1566	8	7	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0009	1566	7	0	1	0	3	3	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0010	1566	7	5	2	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0011	1566	5	0	3	0	2	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0012	1566	4	0	0	4	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0013	1566	3	3	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0014	1566	3	0	0	3	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0015	1566	3	2	1	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0016	1566	3	3	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0017	1566	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0018	1566	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0019	1566	2	0	1	0	1	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	1/0	c0020	1566	2	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0021	1566	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0022	1566	2	2	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0023	1566	2	0	0	2	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0024	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0025	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0026	1566	1	0	0	0	0	1	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0027	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0028	1566	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0029	1566	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0030	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0031	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0032	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0033	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0034	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0035	1566	1	0	0	1	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAPL1_chr4_7425285_7439930	0/0	c0036	1566	1	1	0	0	0	0	copy fasta	PSAPL1	chr4	7425285	7439930
PSAP_chr10_71811298_71856251	1/1	c0001	1575	414	88	70	199	14	41	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0002	1575	5	5	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0003	1575	3	3	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0004	1575	1	0	1	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0005	1575	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0006	1575	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0007	1575	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0008	1575	1	0	0	1	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0009	1575	1	0	0	0	0	1	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0010	1575	1	0	1	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAP_chr10_71811298_71856251	0/0	c0011	1575	1	1	0	0	0	0	copy fasta	PSAP	chr10	71811298	71856251
PSAT1_chr9_78292125_78335093	1/0	c0001	1113	244	43	39	129	7	25	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/1	c0002	1113	164	51	34	51	9	18	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	c0003	1113	2	1	1	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	c0004	1113	1	0	0	1	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	c0005	1113	1	0	0	0	0	1	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	c0006	1113	1	0	0	0	0	1	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	c0007	1113	1	0	0	0	0	1	copy fasta	PSAT1	chr9	78292125	78335093