JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSAT1_chr9_78292125_78335093	0/0	c0008	1113	1	1	0	0	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSAT1_chr9_78292125_78335093	0/0	c0009	1113	1	0	0	1	0	0	copy fasta	PSAT1	chr9	78292125	78335093
PSCA_chr8_142675495_142687725	1/0	c0001	345	210	48	31	95	5	30	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/1	c0002	345	191	34	35	99	10	12	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	c0003	345	25	0	1	22	0	2	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	c0004	345	2	2	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	c0005	345	2	0	1	0	1	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	c0006	345	1	1	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSCA_chr8_142675495_142687725	0/0	c0007	345	1	1	0	0	0	0	copy fasta	PSCA	chr8	142675495	142687725
PSD2_chr5_139790808_139849466	1/1	c0001	2316	224	50	40	91	12	29	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0002	2316	23	11	1	8	0	3	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0003	2316	13	12	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0004	2316	4	4	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0005	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0006	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0007	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0008	2316	1	0	0	0	0	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0009	2316	1	0	0	1	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0010	2316	1	0	0	0	0	1	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0011	2316	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0012	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0013	2316	1	0	1	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0014	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0015	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD2_chr5_139790808_139849466	0/0	c0016	2316	1	1	0	0	0	0	copy fasta	PSD2	chr5	139790808	139849466
PSD3_chr8_18522303_19018703	0/0	c0001	3144	80	39	8	23	2	8	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0002	3144	27	9	1	11	0	6	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0003	3144	27	2	5	14	0	6	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	1/0	c0004	3144	23	3	11	1	3	4	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0005	3144	10	0	2	8	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/1	c0006	3144	9	2	2	0	0	4	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0007	3144	7	5	1	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0008	3144	4	1	0	1	1	1	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0009	3144	4	2	0	0	0	2	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0010	3144	3	3	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0011	3144	3	3	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0012	3144	2	2	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0013	3144	2	1	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0014	3144	2	0	2	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0015	3144	2	0	0	2	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0016	3144	2	0	0	2	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0017	3144	2	0	2	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0018	3144	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0019	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0020	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0021	3144	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0022	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0023	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0024	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0025	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703