JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSD3_chr8_18522303_19018703	0/0	c0026	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0027	3144	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0028	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0029	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0030	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0031	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0032	3144	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0033	3144	1	0	0	1	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0034	3144	1	0	1	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0035	3144	1	1	0	0	0	0	copy fasta	PSD3	chr8	18522303	19018703
PSD3_chr8_18522303_19018703	0/0	c0036	3144	1	0	0	0	0	1	copy fasta	PSD3	chr8	18522303	19018703
PSD4_chr2_113168971_113214391	0/0	c0001	3171	74	3	5	50	3	13	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	1/0	c0002	3171	72	17	15	31	3	5	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0003	3171	70	8	20	22	7	13	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/1	c0004	3171	64	20	12	21	2	8	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0005	3171	20	17	3	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0006	3171	12	0	1	8	1	2	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0007	3171	10	10	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0008	3171	9	0	0	7	0	2	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0009	3171	6	6	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0010	3171	6	0	0	6	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0011	3171	5	0	5	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0012	3171	4	4	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0013	3171	4	0	3	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0014	3171	2	0	1	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0015	3171	2	2	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0016	3171	2	0	0	1	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0017	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0018	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0019	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0020	3171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0021	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0022	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0023	3171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0024	3171	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0025	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0026	3171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0027	3171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0028	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0029	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0030	3171	1	0	1	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0031	3171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0032	3171	1	1	0	0	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0033	3171	1	0	0	0	0	1	copy fasta	PSD4	chr2	113168971	113214391
PSD4_chr2_113168971_113214391	0/0	c0034	3171	1	0	0	1	0	0	copy fasta	PSD4	chr2	113168971	113214391
PSD_chr10_102397619_102423785	1/1	c0001	3075	280	73	56	109	11	29	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0002	3075	74	1	8	57	0	8	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0003	3075	9	1	4	0	1	3	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0004	3075	8	7	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0005	3075	6	6	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785