JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSD_chr10_102397619_102423785	0/0	c0006	3075	2	2	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0007	3075	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0008	3075	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0009	3075	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0010	3090	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0011	3075	1	1	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0012	3075	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0013	3075	1	0	0	1	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0014	3075	1	1	0	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSD_chr10_102397619_102423785	0/0	c0015	3075	1	0	1	0	0	0	copy fasta	PSD	chr10	102397619	102423785
PSEN1_chr14_73131507_73228691	1/1	c0001	1404	372	85	74	165	10	36	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	c0002	1404	2	0	0	2	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	c0003	1404	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	c0004	1404	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	c0005	1404	1	0	0	1	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN1_chr14_73131507_73228691	0/0	c0006	1404	1	1	0	0	0	0	copy fasta	PSEN1	chr14	73131507	73228691
PSEN2_chr1_226865616_226901098	0/1	c0001	1347	175	31	34	85	8	16	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	1/0	c0002	1347	96	8	22	52	5	8	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0003	1347	72	18	7	34	2	11	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0004	1347	20	0	4	13	0	3	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0005	1347	14	12	2	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0006	1347	9	8	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0007	1347	5	5	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0008	1347	5	0	0	5	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0009	1347	3	3	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0010	1347	2	0	0	2	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0011	1347	2	1	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0012	1347	2	0	0	2	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0013	1347	2	0	0	0	2	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0014	1347	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0015	1347	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0016	1347	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0017	1347	1	1	0	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0018	1347	1	0	1	0	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0019	1347	1	0	0	1	0	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0020	1347	1	0	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0021	1347	1	0	0	0	1	0	copy fasta	PSEN2	chr1	226865616	226901098
PSEN2_chr1_226865616_226901098	0/0	c0022	1347	1	0	0	0	0	1	copy fasta	PSEN2	chr1	226865616	226901098
PSENEN_chr19_35740651_35752519	1/1	c0001	306	411	94	72	190	14	39	copy fasta	PSENEN	chr19	35740651	35752519
PSENEN_chr19_35740651_35752519	0/0	c0002	306	1	0	0	0	0	1	copy fasta	PSENEN	chr19	35740651	35752519
PSG11_chr19_43002656_43031469	0/0	c0001	1008	179	32	26	93	11	17	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0002	1008	78	4	11	59	0	4	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/1	c0003	1008	44	11	15	1	4	12	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	1/0	c0004	1008	36	3	18	1	3	10	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0005	1008	21	3	1	15	0	2	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0006	1008	14	14	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0007	1008	13	13	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0008	1008	3	2	1	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0009	1008	2	2	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0010	1008	1	0	0	0	0	1	copy fasta	PSG11	chr19	43002656	43031469