JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSG11_chr19_43002656_43031469	0/0	c0011	1008	1	0	1	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0012	1008	1	0	1	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0013	1008	1	0	0	1	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0014	1008	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0015	1008	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0016	1008	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0017	1008	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0018	1008	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG11_chr19_43002656_43031469	0/0	c0019	1008	1	1	0	0	0	0	copy fasta	PSG11	chr19	43002656	43031469
PSG1_chr19_42861464_42884713	1/1	c0001	1260	182	37	38	86	5	14	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0002	1260	98	19	13	50	2	14	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0003	1260	28	4	13	2	2	7	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0004	1260	23	0	0	22	0	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0005	1260	11	0	3	5	2	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0006	1260	7	0	0	7	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0007	1260	6	0	4	0	2	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0008	1260	5	5	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0009	1260	5	0	2	0	0	3	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0010	1260	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0011	1260	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0012	1260	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0013	1260	3	3	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0014	1260	2	0	0	0	1	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0015	1260	2	1	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0016	1260	2	0	0	2	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0017	1260	2	1	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0018	1260	2	2	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0019	1260	2	0	0	2	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0020	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0021	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0022	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0023	1260	1	0	0	0	0	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0024	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0025	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0026	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0027	1260	1	0	0	0	0	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0028	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0029	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0030	1260	1	0	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0031	1260	1	0	0	0	0	1	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0032	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0033	1260	1	0	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0034	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0035	1260	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0036	1260	1	1	0	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0037	1260	1	0	1	0	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG1_chr19_42861464_42884713	0/0	c0038	1260	1	0	0	1	0	0	copy fasta	PSG1	chr19	42861464	42884713
PSG2_chr19_43059209_43087701	1/1	c0001	1008	259	31	50	147	6	23	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0002	1008	49	8	10	22	4	5	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0003	1008	41	34	4	0	1	2	copy fasta	PSG2	chr19	43059209	43087701