JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSG2_chr19_43059209_43087701	0/0	c0004	1008	29	4	15	0	3	7	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0005	1008	12	1	1	10	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0006	1008	5	0	0	5	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0007	1008	3	3	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0008	1008	3	2	1	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0009	1008	3	0	0	3	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0010	1008	2	2	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0011	1008	2	0	0	0	0	2	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0012	1008	2	0	2	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0013	1008	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0014	1008	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0015	1008	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0016	1008	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0017	1008	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0018	1008	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0019	1008	1	0	1	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0020	1008	1	1	0	0	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0021	1008	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0022	1008	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0023	1008	1	0	0	0	0	1	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0024	1008	1	0	0	1	0	0	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0025	1008	1	0	0	0	0	1	copy fasta	PSG2	chr19	43059209	43087701
PSG2_chr19_43059209_43087701	0/0	c0026	1008	1	0	0	0	0	1	copy fasta	PSG2	chr19	43059209	43087701
PSG3_chr19_42716642_42745481	0/0	c0001	1287	139	21	35	52	10	21	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	1/1	c0002	1287	122	8	25	63	3	21	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0003	1287	39	33	1	2	0	3	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0004	1287	21	20	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0005	1287	20	0	10	5	2	3	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0006	1287	5	3	2	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0007	1287	3	1	1	0	1	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0008	1287	3	1	2	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0009	1287	2	2	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0010	1287	2	2	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0011	857	2	1	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0012	1287	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0013	1287	1	0	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0014	1287	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0015	1287	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0016	1287	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0017	1287	1	0	0	1	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0018	1287	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0019	1287	1	0	1	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0020	1287	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG3_chr19_42716642_42745481	0/0	c0021	1287	1	1	0	0	0	0	copy fasta	PSG3	chr19	42716642	42745481
PSG4_chr19_43187702_43210638	0/1	c0001	1260	109	9	21	51	4	23	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0002	1260	38	11	5	19	1	2	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0003	1260	34	8	11	6	1	8	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0004	1260	21	1	16	0	1	3	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0005	1260	13	4	5	0	3	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0006	1260	11	0	0	10	0	1	copy fasta	PSG4	chr19	43187702	43210638