JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSG4_chr19_43187702_43210638	0/0	c0007	1260	10	6	0	1	0	3	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0008	1260	9	0	0	9	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0009	1260	5	5	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0010	1260	5	5	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0011	1260	5	5	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0012	1260	3	3	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0013	1260	3	0	0	3	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	1/0	c0014	1260	3	0	2	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0015	551	3	1	1	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0016	1260	2	2	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0017	1260	2	0	0	0	1	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0018	1260	2	0	0	2	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0019	1260	2	2	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0020	1260	2	2	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0021	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0022	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0023	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0024	1260	1	0	0	0	1	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0025	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0026	1260	1	0	0	0	0	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0027	1260	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0028	1260	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0029	1260	1	0	0	0	0	1	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0030	1260	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0031	1260	1	0	0	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0032	1260	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0033	1260	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0034	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0035	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0036	1260	1	1	0	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0037	1260	1	0	0	1	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG4_chr19_43187702_43210638	0/0	c0038	1260	1	0	1	0	0	0	copy fasta	PSG4	chr19	43187702	43210638
PSG5_chr19_43162743_43191536	0/0	c0001	1008	179	17	19	116	6	21	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/1	c0002	1008	123	24	12	73	4	9	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	1/0	c0003	1008	62	10	35	3	2	11	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0004	1008	14	7	4	0	2	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0005	1008	12	9	0	2	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0006	1008	6	0	0	6	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0007	1008	5	5	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0008	1008	5	5	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0009	1008	4	4	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0010	1008	3	3	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0011	1008	2	0	1	0	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0012	1008	2	2	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0013	1008	1	0	0	0	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0014	1008	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0015	1008	1	0	0	0	0	1	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0016	1008	1	0	1	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0017	1008	1	0	1	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0018	1008	1	1	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536