JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSG5_chr19_43162743_43191536	0/0	c0019	1008	1	1	0	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0020	1008	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0021	1008	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0022	1008	1	0	1	0	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0023	1008	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0024	1008	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG5_chr19_43162743_43191536	0/0	c0025	1008	1	0	0	1	0	0	copy fasta	PSG5	chr19	43162743	43191536
PSG6_chr19_42897086_42922894	1/1	c0001	1275	185	17	47	91	8	20	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0002	1275	127	27	25	49	8	18	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0003	1275	26	0	0	22	0	4	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0004	1275	11	0	0	11	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0005	1275	9	9	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0006	1275	5	5	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0007	1275	4	4	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0008	1275	3	2	1	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0009	1275	3	2	1	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0010	1275	3	3	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0011	1275	3	3	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0012	1275	2	0	0	2	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0013	1275	2	0	0	2	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0014	1275	2	2	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0015	1275	2	2	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0016	1275	2	2	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0017	1275	2	0	0	2	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0018	1275	2	2	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0019	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0020	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0021	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0022	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0023	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0024	1275	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0025	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0026	1275	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0027	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0028	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0029	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0030	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0031	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0032	1275	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0033	1275	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0034	1275	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0035	1275	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0036	1275	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0037	1275	1	1	0	0	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0038	1275	1	0	0	0	0	1	copy fasta	PSG6	chr19	42897086	42922894
PSG6_chr19_42897086_42922894	0/0	c0039	1275	1	0	0	1	0	0	copy fasta	PSG6	chr19	42897086	42922894
PSG7_chr19_42919132_42942207	0/0	c0000	0	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/1	c0001	1260	219	31	49	111	8	19	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0002	1260	108	23	13	54	3	15	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0003	1260	29	6	12	2	3	6	copy fasta	PSG7	chr19	42919132	42942207