JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSG7_chr19_42919132_42942207	0/0	c0004	1260	9	0	0	9	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0005	1260	6	1	0	1	0	4	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0006	1260	4	4	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0007	1260	4	0	0	4	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0008	1260	4	4	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0009	1260	3	2	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0010	1260	3	3	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0011	1260	3	0	0	3	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0012	1260	2	2	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0013	1260	2	2	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0014	1260	2	1	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0015	1260	2	2	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0016	1260	2	2	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0017	1260	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0018	1260	1	0	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	1/0	c0019	1260	1	0	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0020	1260	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0021	1260	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0022	1260	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0023	1260	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0024	1260	1	0	0	1	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0025	1260	1	0	1	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0026	1260	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0027	1260	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0028	1260	1	1	0	0	0	0	copy fasta	PSG7	chr19	42919132	42942207
PSG7_chr19_42919132_42942207	0/0	c0029	1196	1	0	0	0	0	1	copy fasta	PSG7	chr19	42919132	42942207
PSG8_chr19_42749233_42770678	1/1	c0001	1281	281	22	49	171	6	31	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0002	1281	64	29	13	9	7	6	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0003	1280	19	2	8	4	2	3	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0004	1281	13	13	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0005	1280	8	8	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0006	1281	6	1	0	2	0	3	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0007	1281	6	5	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0008	1281	4	0	1	2	0	1	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0009	1281	4	3	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0010	1281	3	3	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0011	1281	3	3	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0012	1281	2	0	0	2	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0013	1280	2	2	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0014	1280	2	0	2	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0015	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0016	1281	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0017	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0018	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0019	1281	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0020	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0021	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0022	1281	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0023	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0024	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678