JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSG8_chr19_42749233_42770678	0/0	c0025	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0026	1281	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0027	1281	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0028	1281	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0029	1280	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0030	1281	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0031	1280	1	0	1	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0032	1280	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0033	1281	1	0	0	0	1	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0034	1280	1	1	0	0	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG8_chr19_42749233_42770678	0/0	c0035	1280	1	0	0	1	0	0	copy fasta	PSG8	chr19	42749233	42770678
PSG9_chr19_43248282_43274530	1/1	c0001	1281	134	25	37	44	4	22	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0002	1281	20	9	0	10	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0003	1281	8	0	4	0	3	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0004	1281	5	0	0	2	0	3	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0005	1281	5	0	0	5	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0006	1281	4	0	1	0	1	2	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0007	1281	4	1	0	0	0	3	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0008	1281	3	3	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0009	1281	3	0	1	0	0	2	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0010	1281	3	0	3	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0011	1281	2	0	1	0	1	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0012	1281	2	1	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0013	1281	2	0	1	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0014	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0015	1281	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0016	1281	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0017	1281	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0018	1281	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0019	1281	1	0	0	1	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0020	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0021	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0022	1281	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0023	1281	1	0	0	0	1	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0024	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0025	1281	1	0	1	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0026	1281	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0027	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0028	1281	1	0	0	0	0	1	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0029	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSG9_chr19_43248282_43274530	0/0	c0030	1281	1	1	0	0	0	0	copy fasta	PSG9	chr19	43248282	43274530
PSIP1_chr9_15459066_15515970	1/1	c0001	1593	260	64	39	110	10	35	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0002	1593	22	14	5	1	0	2	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0003	1593	6	6	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0004	1593	6	0	0	6	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0005	1593	3	0	0	3	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0006	1593	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0007	1593	1	0	0	0	0	1	copy fasta	PSIP1	chr9	15459066	15515970
PSIP1_chr9_15459066_15515970	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	PSIP1	chr9	15459066	15515970
PSKH1_chr16_67888254_67934676	1/1	c0001	1275	226	79	52	53	10	30	copy fasta	PSKH1	chr16	67888254	67934676