JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSKH1_chr16_67888254_67934676	0/0	c0002	1275	3	3	0	0	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH1_chr16_67888254_67934676	0/0	c0003	1275	1	0	0	1	0	0	copy fasta	PSKH1	chr16	67888254	67934676
PSKH2_chr8_86042109_86074668	1/1	c0001	1158	217	25	59	101	8	22	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0002	1158	130	8	20	77	8	17	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0003	1158	19	17	1	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0004	1158	18	16	2	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0005	1158	10	10	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0006	1158	7	7	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0007	1158	6	6	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0008	1158	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0009	1158	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0010	1158	2	2	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0011	1158	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0012	1158	1	0	0	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0013	1158	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0014	1158	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0015	1158	1	0	0	0	0	1	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0016	1158	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSKH2_chr8_86042109_86074668	0/0	c0017	1158	1	1	0	0	0	0	copy fasta	PSKH2	chr8	86042109	86074668
PSMA1_chr11_14499876_14525386	1/1	c0001	792	407	91	70	185	16	43	copy fasta	PSMA1	chr11	14499876	14525386
PSMA1_chr11_14499876_14525386	0/0	c0002	792	2	2	0	0	0	0	copy fasta	PSMA1	chr11	14499876	14525386
PSMA1_chr11_14499876_14525386	0/0	c0003	792	1	0	0	0	0	1	copy fasta	PSMA1	chr11	14499876	14525386
PSMA1_chr11_14499876_14525386	0/0	c0004	792	1	1	0	0	0	0	copy fasta	PSMA1	chr11	14499876	14525386
PSMA1_chr11_14499876_14525386	0/0	c0005	792	1	0	0	1	0	0	copy fasta	PSMA1	chr11	14499876	14525386
PSMA2_chr7_42911861_42937174	1/1	c0001	705	334	88	64	128	14	38	copy fasta	PSMA2	chr7	42911861	42937174
PSMA2_chr7_42911861_42937174	0/0	c0002	705	2	2	0	0	0	0	copy fasta	PSMA2	chr7	42911861	42937174
PSMA3_chr14_58239843_58277004	1/1	c0001	768	324	76	55	147	10	34	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	c0002	768	4	4	0	0	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	c0003	768	2	2	0	0	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	c0004	768	1	0	1	0	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA3_chr14_58239843_58277004	0/0	c0005	768	1	0	0	1	0	0	copy fasta	PSMA3	chr14	58239843	58277004
PSMA4_chr15_78535444_78557417	0/1	c0001	786	352	72	54	184	12	29	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	1/0	c0002	786	75	15	19	21	2	17	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	c0003	786	1	0	1	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	c0004	786	1	0	0	1	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA4_chr15_78535444_78557417	0/0	c0005	786	1	1	0	0	0	0	copy fasta	PSMA4	chr15	78535444	78557417
PSMA5_chr1_109394042_109431448	1/1	c0001	726	317	95	66	100	14	40	copy fasta	PSMA5	chr1	109394042	109431448
PSMA5_chr1_109394042_109431448	0/0	c0002	726	1	1	0	0	0	0	copy fasta	PSMA5	chr1	109394042	109431448
PSMA6_chr14_35287382_35322493	1/1	c0001	741	361	78	78	154	12	37	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	c0002	741	14	10	2	0	0	2	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	c0003	741	3	1	0	0	1	1	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	c0004	741	1	1	0	0	0	0	copy fasta	PSMA6	chr14	35287382	35322493
PSMA6_chr14_35287382_35322493	0/0	c0005	741	1	0	0	0	1	0	copy fasta	PSMA6	chr14	35287382	35322493
PSMA7_chr20_62131733_62148394	0/1	c0001	747	192	12	49	96	10	24	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	0/0	c0002	747	107	71	18	14	0	4	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	1/0	c0003	747	58	9	11	26	0	11	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	0/0	c0004	747	4	0	0	2	0	2	copy fasta	PSMA7	chr20	62131733	62148394
PSMA7_chr20_62131733_62148394	0/0	c0005	747	1	0	0	0	0	1	copy fasta	PSMA7	chr20	62131733	62148394
PSMA8_chr18_26128869_26198355	1/0	c0001	753	267	84	48	110	8	16	copy fasta	PSMA8	chr18	26128869	26198355
PSMA8_chr18_26128869_26198355	0/1	c0002	753	1	0	0	0	0	0	copy fasta	PSMA8	chr18	26128869	26198355