JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSMB10_chr16_67929506_67941850	1/1	c0001	822	187	35	43	73	4	30	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	c0002	822	67	23	13	24	1	6	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	c0003	822	46	36	6	1	1	2	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	c0004	822	2	2	0	0	0	0	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	c0005	822	1	0	0	0	0	1	copy fasta	PSMB10	chr16	67929506	67941850
PSMB10_chr16_67929506_67941850	0/0	c0006	780	1	0	0	0	0	1	copy fasta	PSMB10	chr16	67929506	67941850
PSMB11_chr14_23037212_23049060	1/1	c0001	903	428	95	76	189	17	49	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0002	903	4	0	0	4	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0003	903	2	0	1	0	1	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0004	903	2	1	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0005	903	2	0	0	2	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0006	903	2	0	2	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0007	903	1	0	0	1	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0008	903	1	0	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0009	903	1	0	1	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0010	903	1	1	0	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0011	903	1	1	0	0	0	0	copy fasta	PSMB11	chr14	23037212	23049060
PSMB11_chr14_23037212_23049060	0/0	c0012	903	1	0	0	0	0	1	copy fasta	PSMB11	chr14	23037212	23049060
PSMB1_chr6_170530120_170558307	1/0	c0001	726	183	70	35	44	10	23	copy fasta	PSMB1	chr6	170530120	170558307
PSMB1_chr6_170530120_170558307	0/1	c0002	726	180	26	29	105	4	15	copy fasta	PSMB1	chr6	170530120	170558307
PSMB1_chr6_170530120_170558307	0/0	c0003	726	1	0	0	1	0	0	copy fasta	PSMB1	chr6	170530120	170558307
PSMB2_chr1_35594541_35646526	1/1	c0001	606	299	91	52	116	10	28	copy fasta	PSMB2	chr1	35594541	35646526
PSMB2_chr1_35594541_35646526	0/0	c0002	606	1	1	0	0	0	0	copy fasta	PSMB2	chr1	35594541	35646526
PSMB3_chr17_38747741_38769225	0/0	c0001	618	343	84	59	144	16	40	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/1	c0002	618	78	4	19	50	0	4	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	c0003	618	5	5	0	0	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	c0004	618	2	2	0	0	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	c0005	618	1	0	0	1	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	c0006	618	1	0	0	1	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB3_chr17_38747741_38769225	0/0	c0007	618	1	1	0	0	0	0	copy fasta	PSMB3	chr17	38747741	38769225
PSMB4_chr1_151394573_151406937	0/0	c0001	795	147	54	17	70	0	6	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	c0002	795	142	32	31	49	6	24	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	c0003	795	104	7	23	62	2	10	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	c0004	795	1	0	0	1	0	0	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	c0005	795	1	0	1	0	0	0	copy fasta	PSMB4	chr1	151394573	151406937
PSMB4_chr1_151394573_151406937	0/0	c0006	795	1	1	0	0	0	0	copy fasta	PSMB4	chr1	151394573	151406937
PSMB5_chr14_23020856_23039900	1/1	c0001	792	397	98	72	164	15	46	copy fasta	PSMB5	chr14	23020856	23039900
PSMB5_chr14_23020856_23039900	0/0	c0002	792	6	1	2	0	1	2	copy fasta	PSMB5	chr14	23020856	23039900
PSMB5_chr14_23020856_23039900	0/0	c0003	792	1	1	0	0	0	0	copy fasta	PSMB5	chr14	23020856	23039900
PSMB6_chr17_4791164_4803495	1/0	c0001	720	186	63	31	70	10	11	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/1	c0002	720	97	25	28	25	5	13	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	c0003	720	96	0	10	69	1	16	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	c0004	720	47	6	3	35	0	3	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	c0005	720	25	0	2	21	0	2	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	c0006	720	2	0	0	2	0	0	copy fasta	PSMB6	chr17	4791164	4803495
PSMB6_chr17_4791164_4803495	0/0	c0007	720	1	0	0	0	0	1	copy fasta	PSMB6	chr17	4791164	4803495
PSMB7_chr9_124348465_124420442	1/1	c0001	834	258	39	38	145	4	30	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	c0002	834	145	54	30	44	4	13	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	c0003	834	2	0	2	0	0	0	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	c0004	834	1	1	0	0	0	0	copy fasta	PSMB7	chr9	124348465	124420442