JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSMB7_chr9_124348465_124420442	0/0	c0005	834	1	0	0	0	0	1	copy fasta	PSMB7	chr9	124348465	124420442
PSMB7_chr9_124348465_124420442	0/0	c0006	834	1	0	0	1	0	0	copy fasta	PSMB7	chr9	124348465	124420442
PSMB8_chr6_32835717_32849047	0/0	c0001	831	339	76	61	156	14	32	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/1	c0002	831	83	11	20	41	2	8	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0003	831	35	4	4	22	1	4	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0004	831	4	2	2	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0005	831	3	2	0	0	0	1	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0006	831	1	0	0	1	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0007	831	1	0	1	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0008	831	1	1	0	0	0	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0009	831	1	0	0	0	0	1	copy fasta	PSMB8	chr6	32835717	32849047
PSMB8_chr6_32835717_32849047	0/0	c0010	831	1	0	0	0	1	0	copy fasta	PSMB8	chr6	32835717	32849047
PSMB9_chr6_32849192_32864851	0/1	c0001	660	276	62	53	122	11	27	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0002	660	89	20	19	40	3	7	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0003	660	67	2	9	46	0	10	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0004	660	7	5	2	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0005	660	7	2	3	0	2	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0006	660	1	0	0	0	0	1	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0007	660	1	0	0	0	0	1	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0008	660	1	0	1	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0009	660	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0010	660	1	0	1	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0011	660	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0012	660	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0013	660	1	1	0	0	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMB9_chr6_32849192_32864851	0/0	c0014	660	1	0	0	1	0	0	copy fasta	PSMB9	chr6	32849192	32864851
PSMC1_chr14_90251553_90280429	0/0	c0001	1323	202	34	46	92	4	26	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	1/1	c0002	1323	183	63	25	74	6	13	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	c0003	1323	2	0	1	0	0	1	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	c0004	1323	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	c0005	1323	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC1_chr14_90251553_90280429	0/0	c0006	1323	1	1	0	0	0	0	copy fasta	PSMC1	chr14	90251553	90280429
PSMC2_chr7_103342643_103374395	0/1	c0001	1302	364	71	67	172	12	41	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	1/0	c0002	1302	13	11	1	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	c0003	1302	2	2	0	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	c0004	1302	1	1	0	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	c0005	1302	1	1	0	0	0	0	copy fasta	PSMC2	chr7	103342643	103374395
PSMC2_chr7_103342643_103374395	0/0	c0006	1302	1	0	0	0	0	1	copy fasta	PSMC2	chr7	103342643	103374395
PSMC3IP_chr17_42567310_42582729	1/1	c0001	654	348	77	69	139	18	43	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	c0002	654	32	8	1	20	0	3	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	c0003	654	4	4	0	0	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	c0004	654	1	0	0	1	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	c0005	654	1	0	0	0	0	1	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	c0006	654	1	1	0	0	0	0	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3IP_chr17_42567310_42582729	0/0	c0007	654	1	0	0	0	0	1	copy fasta	PSMC3IP	chr17	42567310	42582729
PSMC3_chr11_47413775_47431439	1/1	c0001	1320	366	76	72	160	16	40	copy fasta	PSMC3	chr11	47413775	47431439
PSMC3_chr11_47413775_47431439	0/0	c0002	1320	14	14	0	0	0	0	copy fasta	PSMC3	chr11	47413775	47431439
PSMC4_chr19_39966165_39986764	1/1	c0001	1257	286	71	62	105	14	32	copy fasta	PSMC4	chr19	39966165	39986764
PSMC4_chr19_39966165_39986764	0/0	c0002	1257	52	10	5	33	0	4	copy fasta	PSMC4	chr19	39966165	39986764
PSMC4_chr19_39966165_39986764	0/0	c0003	1257	12	10	0	0	1	1	copy fasta	PSMC4	chr19	39966165	39986764