JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSMC4_chr19_39966165_39986764	0/0	c0004	1257	6	0	1	0	1	4	copy fasta	PSMC4	chr19	39966165	39986764
PSMC4_chr19_39966165_39986764	0/0	c0005	1257	1	0	0	0	0	1	copy fasta	PSMC4	chr19	39966165	39986764
PSMC4_chr19_39966165_39986764	0/0	c0006	1257	1	1	0	0	0	0	copy fasta	PSMC4	chr19	39966165	39986764
PSMC5_chr17_63822431_63837019	0/0	c0001	1221	146	20	25	82	4	15	copy fasta	PSMC5	chr17	63822431	63837019
PSMC5_chr17_63822431_63837019	1/0	c0002	1221	104	2	20	61	5	15	copy fasta	PSMC5	chr17	63822431	63837019
PSMC5_chr17_63822431_63837019	0/1	c0003	1221	104	64	18	10	3	8	copy fasta	PSMC5	chr17	63822431	63837019
PSMC5_chr17_63822431_63837019	0/0	c0004	1221	2	2	0	0	0	0	copy fasta	PSMC5	chr17	63822431	63837019
PSMC5_chr17_63822431_63837019	0/0	c0005	1221	1	0	0	1	0	0	copy fasta	PSMC5	chr17	63822431	63837019
PSMC5_chr17_63822431_63837019	0/0	c0006	1221	1	0	1	0	0	0	copy fasta	PSMC5	chr17	63822431	63837019
PSMC6_chr14_52702200_52733590	1/1	c0001	1170	385	92	66	179	12	34	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	c0002	1170	12	0	0	10	0	2	copy fasta	PSMC6	chr14	52702200	52733590
PSMC6_chr14_52702200_52733590	0/0	c0003	1170	1	0	0	1	0	0	copy fasta	PSMC6	chr14	52702200	52733590
PSMD10_chrX_108079207_108096542	1/1	c0001	681	300	73	51	131	13	30	copy fasta	PSMD10	chrX	108079207	108096542
PSMD10_chrX_108079207_108096542	0/0	c0002	681	1	0	0	1	0	0	copy fasta	PSMD10	chrX	108079207	108096542
PSMD11_chr17_32439510_32488319	1/1	c0001	1269	285	89	66	82	6	40	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	c0002	1269	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	c0003	1269	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	c0004	1269	1	0	0	0	0	1	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	c0005	1269	1	1	0	0	0	0	copy fasta	PSMD11	chr17	32439510	32488319
PSMD11_chr17_32439510_32488319	0/0	c0006	1269	1	0	0	0	0	1	copy fasta	PSMD11	chr17	32439510	32488319
PSMD12_chr17_67332916_67371577	1/1	c0001	1371	303	67	59	134	9	32	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	c0002	1371	90	17	17	38	4	14	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	c0003	1371	2	0	0	2	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	c0004	1371	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	c0005	1371	1	0	0	0	1	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD12_chr17_67332916_67371577	0/0	c0006	1371	1	1	0	0	0	0	copy fasta	PSMD12	chr17	67332916	67371577
PSMD13_chr11_231976_257984	0/1	c0001	1131	362	83	69	161	11	37	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	1/0	c0002	1131	86	15	13	40	5	12	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	c0003	1131	1	0	0	1	0	0	copy fasta	PSMD13	chr11	231976	257984
PSMD13_chr11_231976_257984	0/0	c0004	1131	1	0	0	0	0	1	copy fasta	PSMD13	chr11	231976	257984
PSMD14_chr2_161303425_161416717	1/1	c0001	933	268	72	34	116	12	32	copy fasta	PSMD14	chr2	161303425	161416717
PSMD1_chr2_231051867_231177827	1/1	c0001	2862	353	78	48	179	10	36	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	c0002	2862	5	5	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	c0003	2862	2	0	0	2	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	c0004	2862	1	0	0	1	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	c0005	2862	1	1	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	c0006	2862	1	1	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD1_chr2_231051867_231177827	0/0	c0007	2862	1	1	0	0	0	0	copy fasta	PSMD1	chr2	231051867	231177827
PSMD2_chr3_184294241_184314050	1/1	c0001	2727	376	81	58	178	14	43	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0002	2727	23	3	8	6	2	4	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0003	2727	5	4	1	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0004	2727	4	1	3	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0005	2727	1	0	1	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0006	2727	1	0	0	0	1	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0007	2727	1	0	0	0	1	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0008	2727	1	0	1	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0009	2727	1	1	0	0	0	0	copy fasta	PSMD2	chr3	184294241	184314050
PSMD2_chr3_184294241_184314050	0/0	c0010	2727	1	0	0	0	0	1	copy fasta	PSMD2	chr3	184294241	184314050
PSMD3_chr17_39975807_40002959	1/1	c0001	1605	211	28	36	120	5	20	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0002	1605	141	19	30	65	5	22	copy fasta	PSMD3	chr17	39975807	40002959