JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSMD3_chr17_39975807_40002959	0/0	c0003	1605	31	22	4	0	2	3	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0004	1605	11	11	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0005	1605	6	0	3	0	2	1	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0006	1605	6	0	0	6	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0007	1605	4	4	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0008	1605	2	2	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0009	1605	1	0	0	1	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0010	1605	1	1	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0011	1605	1	1	0	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0012	1605	1	0	1	0	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0013	1605	1	0	0	1	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD3_chr17_39975807_40002959	0/0	c0014	1605	1	0	0	1	0	0	copy fasta	PSMD3	chr17	39975807	40002959
PSMD4_chr1_151249734_151272479	0/1	c0001	1134	233	58	46	98	11	19	copy fasta	PSMD4	chr1	151249734	151272479
PSMD4_chr1_151249734_151272479	1/0	c0002	1134	181	35	28	92	6	19	copy fasta	PSMD4	chr1	151249734	151272479
PSMD4_chr1_151249734_151272479	0/0	c0003	1134	3	0	0	0	1	2	copy fasta	PSMD4	chr1	151249734	151272479
PSMD4_chr1_151249734_151272479	0/0	c0004	1134	2	0	0	0	0	2	copy fasta	PSMD4	chr1	151249734	151272479
PSMD4_chr1_151249734_151272479	0/0	c0005	1134	1	1	0	0	0	0	copy fasta	PSMD4	chr1	151249734	151272479
PSMD5_chr9_120811053_120847922	1/0	c0001	1515	232	76	33	105	5	12	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	c0002	1515	82	13	12	37	5	15	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	c0003	1515	38	0	5	32	0	1	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/1	c0004	1515	1	0	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	c0005	1515	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	c0006	1492	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD5_chr9_120811053_120847922	0/0	c0007	1515	1	1	0	0	0	0	copy fasta	PSMD5	chr9	120811053	120847922
PSMD6_chr3_64005551_64028494	1/1	c0001	1170	422	90	79	195	18	38	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	c0002	1170	1	1	0	0	0	0	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	c0003	1170	1	0	1	0	0	0	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	c0004	1170	1	0	0	1	0	0	copy fasta	PSMD6	chr3	64005551	64028494
PSMD6_chr3_64005551_64028494	0/0	c0005	1170	1	1	0	0	0	0	copy fasta	PSMD6	chr3	64005551	64028494
PSMD7_chr16_74291814_74311288	1/1	c0001	975	444	96	77	205	18	46	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	c0002	975	2	0	0	2	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	c0003	975	1	0	0	1	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD7_chr16_74291814_74311288	0/0	c0004	975	1	0	1	0	0	0	copy fasta	PSMD7	chr16	74291814	74311288
PSMD8_chr19_38369571_38388824	1/1	c0001	1053	366	81	59	169	16	39	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0002	1053	31	1	15	14	0	1	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0003	1053	15	0	0	15	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0004	1053	4	0	4	0	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0005	1053	2	2	0	0	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0006	1053	2	0	0	0	0	2	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0007	1053	1	0	0	0	0	1	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0009	1053	1	1	0	0	0	0	copy fasta	PSMD8	chr19	38369571	38388824
PSMD8_chr19_38369571_38388824	0/0	c0010	1053	1	0	0	0	0	1	copy fasta	PSMD8	chr19	38369571	38388824
PSMD9_chr12_121883790_121923297	0/1	c0001	672	202	67	24	78	7	25	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0002	672	110	3	29	56	7	15	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	1/0	c0003	672	48	5	13	21	2	6	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0004	672	13	10	3	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0005	672	7	0	0	7	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0006	672	7	0	0	7	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0007	672	5	0	0	5	0	0	copy fasta	PSMD9	chr12	121883790	121923297