JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSMD9_chr12_121883790_121923297	0/0	c0008	672	4	0	0	4	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0009	672	1	0	1	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSMD9_chr12_121883790_121923297	0/0	c0010	672	1	1	0	0	0	0	copy fasta	PSMD9	chr12	121883790	121923297
PSME1_chr14_24131194_24143962	1/1	c0001	750	407	92	77	178	16	42	copy fasta	PSME1	chr14	24131194	24143962
PSME1_chr14_24131194_24143962	0/0	c0002	750	7	4	1	0	0	2	copy fasta	PSME1	chr14	24131194	24143962
PSME1_chr14_24131194_24143962	0/0	c0003	750	4	0	4	0	0	0	copy fasta	PSME1	chr14	24131194	24143962
PSME2_chr14_24138365_24151610	0/0	c0001	720	239	70	41	102	8	18	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	0/1	c0002	720	153	11	34	72	10	25	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	0/0	c0003	720	10	0	0	10	0	0	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	0/0	c0004	720	8	8	0	0	0	0	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	0/0	c0005	720	7	7	0	0	0	0	copy fasta	PSME2	chr14	24138365	24151610
PSME2_chr14_24138365_24151610	1/0	c0006	720	3	0	1	0	0	1	copy fasta	PSME2	chr14	24138365	24151610
PSME3IP1_chr16_57147466_57191039	1/1	c0001	765	361	84	60	161	14	40	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	c0002	765	2	2	0	0	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3IP1_chr16_57147466_57191039	0/0	c0003	765	1	0	0	1	0	0	copy fasta	PSME3IP1	chr16	57147466	57191039
PSME3_chr17_42828397_42848760	1/1	c0001	765	264	88	54	68	10	42	copy fasta	PSME3	chr17	42828397	42848760
PSME4_chr2_53859069_53975993	1/0	c0001	5532	72	26	19	7	6	13	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0002	5532	62	6	0	46	2	8	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/1	c0003	5532	59	6	16	24	1	11	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0004	5532	57	6	4	47	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0005	5532	46	1	4	37	2	2	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0006	5532	35	23	5	3	3	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0007	5532	8	6	1	0	0	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0008	5532	8	0	6	1	0	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0009	5532	7	6	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0010	5532	3	3	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0011	5532	3	2	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0012	5532	2	2	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0013	5532	2	0	0	2	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0014	5532	1	0	0	1	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0015	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0016	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0017	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0018	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0019	5532	1	0	0	0	0	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0020	5532	1	0	0	1	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0021	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0022	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0023	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0024	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0025	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0026	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0027	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0028	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0029	5532	1	0	0	0	0	1	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0030	5532	1	1	0	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0031	5532	1	0	1	0	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0032	5532	1	0	0	1	0	0	copy fasta	PSME4	chr2	53859069	53975993
PSME4_chr2_53859069_53975993	0/0	c0033	5532	1	0	0	0	0	1	copy fasta	PSME4	chr2	53859069	53975993
PSMF1_chr20_1113602_1177246	0/0	c0001	816	185	48	40	56	11	30	copy fasta	PSMF1	chr20	1113602	1177246