JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSMF1_chr20_1113602_1177246	0/0	c0002	816	71	0	12	49	3	7	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0003	816	35	17	8	5	4	1	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0004	816	21	13	2	6	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0005	816	6	6	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0006	816	3	3	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0007	816	3	3	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0008	816	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMF1_chr20_1113602_1177246	0/0	c0009	816	1	1	0	0	0	0	copy fasta	PSMF1	chr20	1113602	1177246
PSMG1_chr21_39169769_39188451	0/0	c0001	867	161	33	27	75	12	14	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	1/0	c0002	867	147	22	14	90	1	19	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/1	c0003	867	74	28	22	13	5	5	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	c0004	867	3	0	0	3	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	c0005	867	3	3	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	c0006	867	1	0	0	1	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	c0007	867	1	1	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	c0008	867	1	0	1	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG1_chr21_39169769_39188451	0/0	c0009	867	1	1	0	0	0	0	copy fasta	PSMG1	chr21	39169769	39188451
PSMG2_chr18_12698042_12730740	1/1	c0001	795	296	73	50	123	9	39	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0002	795	90	16	19	46	2	7	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0003	795	7	0	0	7	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0004	795	2	0	0	2	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0005	795	1	0	0	1	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0006	795	1	0	0	0	1	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0007	795	1	0	1	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0008	795	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0009	795	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0010	795	1	1	0	0	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG2_chr18_12698042_12730740	0/0	c0011	795	1	0	0	1	0	0	copy fasta	PSMG2	chr18	12698042	12730740
PSMG3_chr7_1562332_1575032	1/1	c0001	369	364	90	76	140	14	42	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	c0002	369	2	0	2	0	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	c0003	369	1	0	0	1	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG3_chr7_1562332_1575032	0/0	c0004	369	1	0	0	1	0	0	copy fasta	PSMG3	chr7	1562332	1575032
PSMG4_chr6_3253947_3273049	1/1	c0001	372	407	89	69	187	16	44	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	0/0	c0002	372	2	1	1	0	0	0	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	0/0	c0003	372	1	1	0	0	0	0	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	0/0	c0004	372	1	1	0	0	0	0	copy fasta	PSMG4	chr6	3253947	3273049
PSMG4_chr6_3253947_3273049	0/0	c0005	372	1	0	0	1	0	0	copy fasta	PSMG4	chr6	3253947	3273049
PSORS1C1_chr6_31109800_31145092	0/1	c0001	459	248	44	52	108	11	32	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0002	459	64	19	1	42	1	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0003	458	30	11	8	6	1	4	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0004	459	29	0	1	26	0	2	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0005	460	29	11	11	6	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0006	460	27	0	0	22	0	5	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0007	459	6	1	4	0	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0008	459	5	1	2	0	1	1	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0009	458	4	3	1	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0010	459	2	0	0	0	2	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0011	459	2	2	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0012	459	2	2	0	0	0	0	copy fasta	PSORS1C1	chr6	31109800	31145092
PSORS1C1_chr6_31109800_31145092	0/0	c0013	460	1	0	0	0	0	1	copy fasta	PSORS1C1	chr6	31109800	31145092