Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCD1_chrX_153719856_153749755	1/1	c0001	2238	257	74	45	104	9	23	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0002	2238	18	2	2	5	2	7	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0003	2238	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0004	2239	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0005	2238	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0006	2238	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0007	2238	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0008	2238	1	1	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0009	2238	1	0	1	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0010	2238	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0011	2238	1	1	0	0	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD1_chrX_153719856_153749755	0/0	c0012	2242	1	0	0	1	0	0	copy fasta	ABCD1	chrX	153719856	153749755
ABCD2_chr12_39545033_39624803	1/1	c0001	2223	318	78	50	145	6	37	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0002	2223	11	0	6	5	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0003	2223	3	0	2	0	0	1	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0004	2223	2	0	0	2	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0005	2223	2	0	2	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0006	2223	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0007	2223	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0008	2223	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD2_chr12_39545033_39624803	0/0	c0009	2223	1	1	0	0	0	0	copy fasta	ABCD2	chr12	39545033	39624803
ABCD3_chr1_94413389_94523663	1/0	c0001	1980	280	76	33	141	7	22	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/1	c0002	1980	78	5	17	38	5	12	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	c0003	1980	3	0	0	3	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD3_chr1_94413389_94523663	0/0	c0004	1980	1	1	0	0	0	0	copy fasta	ABCD3	chr1	94413389	94523663
ABCD4_chr14_74280269_74307934	1/0	c0001	1821	233	44	50	107	6	25	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/1	c0002	1821	100	15	19	45	8	12	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0003	1821	21	19	2	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0004	1821	4	4	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0005	1821	4	3	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0006	1821	3	0	1	0	2	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0007	1821	2	2	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0008	1821	2	2	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0009	1821	2	2	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0010	1821	2	0	0	1	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0011	1821	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0012	1821	1	0	0	1	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0013	1821	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0014	1821	1	0	0	0	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0015	1821	1	0	0	1	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0016	1821	1	0	0	1	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0017	1821	1	0	0	1	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0018	1821	1	1	0	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0019	1821	1	0	1	0	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0020	1821	1	0	0	1	0	0	copy fasta	ABCD4	chr14	74280269	74307934
ABCD4_chr14_74280269_74307934	0/0	c0021	1821	1	0	0	0	0	1	copy fasta	ABCD4	chr14	74280269	74307934
ABCE1_chr4_145093311_145134524	1/1	c0001	1800	251	81	55	77	10	26	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	c0002	1800	4	4	0	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	c0003	1800	2	1	1	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524
ABCE1_chr4_145093311_145134524	0/0	c0004	1800	2	2	0	0	0	0	copy fasta	ABCE1	chr4	145093311	145134524