JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AR_chrX_67539021_67735619	0/0	c0074	2766	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0075	2772	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0076	2778	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0077	2769	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0078	2769	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0079	2769	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0080	2775	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0081	2760	1	0	1	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0082	2775	1	0	0	0	0	1	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0083	2772	1	1	0	0	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0084	2772	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AR_chrX_67539021_67735619	0/0	c0085	2781	1	0	0	1	0	0	copy fasta	AR	chrX	67539021	67735619
AS3MT_chr10_102864470_102906899	1/1	c0001	1127	326	65	60	156	11	32	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0002	1127	26	11	5	7	3	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0003	1127	1	1	0	0	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0004	1127	1	0	0	1	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0005	1127	1	0	0	1	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0006	1127	1	1	0	0	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0007	1127	1	1	0	0	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0008	1127	1	0	1	0	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0009	1127	1	0	0	0	0	1	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0010	1127	1	0	0	1	0	0	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0011	1127	1	0	0	0	0	1	copy fasta	AS3MT	chr10	102864470	102906899
AS3MT_chr10_102864470_102906899	0/0	c0012	1127	1	1	0	0	0	0	copy fasta	AS3MT	chr10	102864470	102906899
ASAH1_chr8_18050992_18089107	0/1	c0001	1188	170	22	45	75	10	17	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0002	1188	163	32	25	81	8	17	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	1/0	c0003	1188	67	39	3	20	0	4	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0004	1188	7	0	0	7	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0005	1188	5	0	0	0	0	5	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0006	1188	5	0	1	4	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0007	1188	1	1	0	0	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0008	1188	1	0	0	0	0	1	copy fasta	ASAH1	chr8	18050992	18089107
ASAH1_chr8_18050992_18089107	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	ASAH1	chr8	18050992	18089107
ASAH2B_chr10_50734936_50764255	0/1	c0001	483	344	48	61	192	10	32	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	1/0	c0002	483	67	43	11	2	0	10	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	c0003	483	2	0	0	2	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2B_chr10_50734936_50764255	0/0	c0004	483	1	1	0	0	0	0	copy fasta	ASAH2B	chr10	50734936	50764255
ASAH2_chr10_50179861_50256516	0/1	c0001	2343	122	15	30	56	7	13	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0002	2343	87	27	8	44	0	8	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0003	2343	87	3	20	52	8	4	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0004	2343	37	8	6	20	0	3	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	1/0	c0005	2343	34	23	6	3	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0006	2343	7	3	0	4	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0007	2343	5	4	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0008	2343	4	0	0	4	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0009	2343	3	1	2	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0010	2343	3	3	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0011	2343	3	2	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0012	2343	2	1	0	0	0	1	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0013	2343	2	1	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516