JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSORS1C2_chr6_31132534_31144066	0/1	c0001	411	383	87	63	178	17	37	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0002	411	21	0	10	8	1	2	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0003	411	15	0	0	15	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0004	410	11	2	4	0	0	5	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0005	411	10	1	1	8	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0006	411	8	1	0	6	0	1	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0007	411	6	4	0	1	0	1	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0008	411	4	1	1	0	0	2	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0009	411	1	0	1	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0010	411	1	0	1	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSORS1C2_chr6_31132534_31144066	0/0	c0011	411	1	0	1	0	0	0	copy fasta	PSORS1C2	chr6	31132534	31144066
PSPC1_chr13_19697500_19787945	1/1	c0001	1572	255	90	61	60	14	28	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	c0002	1572	1	0	1	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	c0003	1572	1	1	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPC1_chr13_19697500_19787945	0/0	c0004	1572	1	1	0	0	0	0	copy fasta	PSPC1	chr13	19697500	19787945
PSPH_chr7_56006064_56056444	1/1	c0001	678	384	88	72	172	16	34	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	c0002	678	5	5	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	c0003	678	1	0	0	1	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	c0004	678	1	1	0	0	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPH_chr7_56006064_56056444	0/0	c0005	678	1	0	0	1	0	0	copy fasta	PSPH	chr7	56006064	56056444
PSPN_chr19_6370148_6380933	1/1	c0001	471	195	10	52	95	13	23	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0002	471	165	76	16	63	0	10	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0003	471	8	0	0	8	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0004	471	5	0	3	0	1	1	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0005	471	3	3	0	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0006	471	2	0	0	2	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0007	471	1	1	0	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSPN_chr19_6370148_6380933	0/0	c0008	471	1	0	1	0	0	0	copy fasta	PSPN	chr19	6370148	6380933
PSRC1_chr1_109274556_109288145	1/1	c0001	1002	380	77	70	166	18	47	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0002	1002	18	17	1	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0003	1002	13	1	1	10	0	1	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0004	1002	10	0	2	8	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0005	1002	4	0	0	4	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0006	1002	3	0	3	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0007	1002	3	0	3	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0008	1002	3	3	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0009	1002	1	1	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0010	1002	1	0	0	1	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0011	1002	1	1	0	0	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSRC1_chr1_109274556_109288145	0/0	c0012	1002	1	0	0	1	0	0	copy fasta	PSRC1	chr1	109274556	109288145
PSTK_chr10_122975401_122995390	1/1	c0001	1077	170	31	24	90	2	21	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0002	1077	94	35	13	34	3	9	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0003	1077	72	6	20	28	6	12	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0004	1077	42	24	12	1	3	2	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0005	1077	34	0	3	30	0	1	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0006	1077	2	0	0	1	0	1	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	PSTK	chr10	122975401	122995390
PSTK_chr10_122975401_122995390	0/0	c0008	1077	1	0	0	1	0	0	copy fasta	PSTK	chr10	122975401	122995390
PSTPIP2_chr18_45978536_46077260	1/1	c0001	1005	169	33	40	67	7	20	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	c0002	1005	108	31	13	54	3	7	copy fasta	PSTPIP2	chr18	45978536	46077260