JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PSTPIP2_chr18_45978536_46077260	0/0	c0003	1005	22	22	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	c0004	1005	9	2	0	2	0	5	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	c0005	1005	7	1	1	5	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PSTPIP2_chr18_45978536_46077260	0/0	c0006	1005	1	1	0	0	0	0	copy fasta	PSTPIP2	chr18	45978536	46077260
PTAFR_chr1_28142166_28181690	1/1	c0001	1029	266	80	44	85	16	39	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	c0002	1029	25	0	0	24	0	1	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	c0003	1029	11	9	2	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	c0004	1029	2	2	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	c0005	1029	1	0	0	1	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAFR_chr1_28142166_28181690	0/0	c0006	1029	1	1	0	0	0	0	copy fasta	PTAFR	chr1	28142166	28181690
PTAR1_chr9_69704525_69765011	1/1	c0001	1209	376	81	52	184	10	47	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	c0002	1209	7	7	0	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	c0003	1209	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	c0004	1209	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	c0005	1209	1	0	1	0	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	c0006	1209	1	0	0	0	0	1	copy fasta	PTAR1	chr9	69704525	69765011
PTAR1_chr9_69704525_69765011	0/0	c0007	1209	1	0	0	1	0	0	copy fasta	PTAR1	chr9	69704525	69765011
PTBP1_chr19_792452_817312	1/1	c0001	1674	224	29	40	115	14	24	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0002	1674	56	11	21	8	2	14	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0003	1674	37	28	3	2	0	4	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0004	1674	18	6	4	4	2	2	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0005	1674	10	0	6	4	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0006	1674	7	2	2	2	0	1	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0007	1674	4	4	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0008	1674	4	4	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0009	1674	3	0	0	3	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0010	1674	3	0	1	0	0	2	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0011	1674	3	0	0	3	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0012	1674	2	2	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0013	1674	2	1	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0014	1674	2	1	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0015	1674	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0016	1674	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0017	1674	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0018	1674	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0019	1674	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0020	1674	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0021	1674	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0022	1674	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0023	1674	1	0	0	0	0	1	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0024	1674	1	1	0	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0025	1674	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0026	1674	1	0	1	0	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP1_chr19_792452_817312	0/0	c0027	1674	1	0	0	1	0	0	copy fasta	PTBP1	chr19	792452	817312
PTBP2_chr1_96716784_96820049	1/0	c0001	1596	253	39	53	122	7	31	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/1	c0002	1596	108	45	11	40	7	4	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	c0003	1596	1	1	0	0	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	c0004	1596	1	1	0	0	0	0	copy fasta	PTBP2	chr1	96716784	96820049
PTBP2_chr1_96716784_96820049	0/0	c0005	1596	1	0	0	0	0	1	copy fasta	PTBP2	chr1	96716784	96820049
PTBP3_chr9_112213435_112338619	1/1	c0001	1575	328	72	61	146	14	33	copy fasta	PTBP3	chr9	112213435	112338619