JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTBP3_chr9_112213435_112338619	0/0	c0002	1575	9	0	0	8	0	1	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	c0003	1575	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	c0004	1575	1	0	0	1	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	c0005	1575	1	0	1	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	c0006	1575	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTBP3_chr9_112213435_112338619	0/0	c0007	1575	1	1	0	0	0	0	copy fasta	PTBP3	chr9	112213435	112338619
PTCD1_chr7_99411739_99443798	1/1	c0001	2103	195	32	45	91	9	16	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0002	2103	89	7	5	60	1	16	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0003	2103	38	24	7	1	4	2	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0004	2103	8	3	0	5	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0005	2103	6	6	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0006	2103	5	5	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0007	2103	4	3	1	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0008	2103	4	4	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0009	2103	4	0	0	4	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0010	2103	4	1	1	1	1	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0011	2103	3	3	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0012	2103	2	2	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0013	2103	2	0	0	2	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0014	2103	2	2	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0015	2103	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0016	2103	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0017	2103	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0018	2103	1	0	0	0	0	1	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0019	2103	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0020	2103	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0021	2103	1	0	0	0	1	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0022	2103	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0023	2103	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0024	2103	1	0	0	0	0	1	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0025	2103	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0026	2103	1	1	0	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0027	2103	1	0	1	0	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD1_chr7_99411739_99443798	0/0	c0028	2103	1	0	0	1	0	0	copy fasta	PTCD1	chr7	99411739	99443798
PTCD2_chr5_72315373_72373395	1/1	c0001	1167	326	82	60	130	14	38	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	c0002	1167	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD2_chr5_72315373_72373395	0/0	c0003	1167	1	0	0	1	0	0	copy fasta	PTCD2	chr5	72315373	72373395
PTCD3_chr2_86101235_86147157	1/1	c0001	2070	308	58	66	138	9	35	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0002	2070	47	0	0	43	0	4	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0003	2070	18	11	4	0	1	2	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0004	2070	15	15	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0005	2070	3	0	0	3	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0006	2070	2	2	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0007	2070	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0008	2070	1	1	0	0	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0009	2070	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0010	2070	1	0	0	1	0	0	copy fasta	PTCD3	chr2	86101235	86147157
PTCD3_chr2_86101235_86147157	0/0	c0011	2070	1	0	0	0	0	1	copy fasta	PTCD3	chr2	86101235	86147157
PTCH1_chr9_95437980_95514266	0/1	c0001	4344	74	15	12	39	3	4	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	1/0	c0002	4344	65	27	18	8	3	8	copy fasta	PTCH1	chr9	95437980	95514266