JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTCH1_chr9_95437980_95514266	0/0	c0003	4344	45	19	5	17	2	2	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0004	4344	25	1	2	16	2	4	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0005	4344	20	9	0	9	0	2	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0006	4344	6	0	0	5	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0007	4344	4	0	0	3	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0008	4344	4	4	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0009	4344	4	1	2	0	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0010	4344	3	0	0	3	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0011	4344	3	0	0	2	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0012	4344	2	0	0	2	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0013	4344	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0014	4344	2	1	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0015	4344	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0016	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0017	4344	1	0	0	0	1	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0018	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0019	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0020	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0021	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0022	4344	1	0	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0023	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0024	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0025	4344	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0026	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0027	4344	1	0	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0028	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0029	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0030	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0031	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0032	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0033	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0034	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0035	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0036	4344	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0037	4344	1	0	0	0	1	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0038	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95514266	0/0	c0039	4344	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95514266
PTCH1_chr9_95437980_95521971	0/1	c0001	4341	76	12	13	43	3	4	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	1/0	c0002	4341	49	12	18	9	2	7	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0003	4341	44	18	5	17	2	2	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0004	4341	22	1	2	15	1	3	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0005	4341	19	8	0	9	0	2	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0006	4341	14	13	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0007	4341	5	0	0	4	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0008	4341	4	0	0	3	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0009	4341	4	1	2	0	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0010	4341	4	4	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0011	4341	3	0	0	3	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0012	4341	3	0	0	3	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0013	4341	3	0	0	2	0	1	copy fasta	PTCH1	chr9	95437980	95521971