JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTCH1_chr9_95437980_95521971	0/0	c0014	4341	2	2	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0015	4341	2	1	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0016	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0017	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0018	4341	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0019	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0020	4341	1	0	0	0	1	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0021	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0022	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0023	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0024	4341	1	0	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0025	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0026	4341	1	0	1	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0027	4341	1	0	0	0	0	1	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0028	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0029	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0030	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0031	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0032	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0033	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0034	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0035	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0036	4341	1	0	0	0	1	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0037	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0038	4341	1	0	0	1	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH1_chr9_95437980_95521971	0/0	c0039	4341	1	1	0	0	0	0	copy fasta	PTCH1	chr9	95437980	95521971
PTCH2_chr1_44816938_44848253	1/0	c0001	3612	169	36	32	67	9	24	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0002	3612	67	10	12	36	4	5	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/1	c0003	3612	50	12	6	22	3	6	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0004	3612	25	0	2	22	0	1	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0005	3612	23	22	1	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0006	3612	4	0	0	4	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0007	3612	4	0	0	4	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0008	3612	3	0	0	3	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0009	3612	3	0	3	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0010	3612	3	3	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0011	3612	2	0	2	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0012	3612	2	0	0	2	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0013	3612	1	0	0	1	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0014	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0015	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0016	3612	1	0	0	1	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0017	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0018	3612	1	0	1	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0019	3612	1	0	0	1	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0020	3612	1	0	0	1	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0021	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0022	3612	1	0	0	0	0	1	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0023	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0024	3612	1	0	1	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253