JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTCH2_chr1_44816938_44848253	0/0	c0025	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0026	3612	1	1	0	0	0	0	copy fasta	PTCH2	chr1	44816938	44848253
PTCH2_chr1_44816938_44848253	0/0	c0027	3612	1	0	0	0	0	1	copy fasta	PTCH2	chr1	44816938	44848253
PTCHD1_chrX_23329849_23409374	0/0	c0001	2667	179	65	26	71	5	12	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	1/1	c0002	2667	105	3	19	61	0	20	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	c0003	2667	8	6	2	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	c0004	2667	2	0	2	0	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	c0005	2667	2	0	0	2	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD1_chrX_23329849_23409374	0/0	c0006	2667	1	0	0	1	0	0	copy fasta	PTCHD1	chrX	23329849	23409374
PTCHD4_chr6_47851673_48116197	0/0	c0001	2532	83	27	20	21	7	8	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	1/1	c0002	2532	71	25	12	18	3	11	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0003	2532	17	10	2	0	0	5	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0004	2532	2	0	1	1	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0005	2532	2	0	0	0	2	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0006	2532	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0007	2532	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0008	2532	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0009	2532	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0010	2532	1	0	1	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0011	2532	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCHD4_chr6_47851673_48116197	0/0	c0012	2532	1	1	0	0	0	0	copy fasta	PTCHD4	chr6	47851673	48116197
PTCRA_chr6_42911053_42930838	1/1	c0001	846	324	42	60	178	10	32	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0002	846	62	33	15	6	4	4	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0003	846	12	12	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0004	846	6	5	1	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0005	846	3	0	2	0	0	1	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0006	846	3	3	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0007	846	1	0	0	0	0	1	copy fasta	PTCRA	chr6	42911053	42930838
PTCRA_chr6_42911053_42930838	0/0	c0008	846	1	1	0	0	0	0	copy fasta	PTCRA	chr6	42911053	42930838
PTDSS1_chr8_96256902_96341995	1/1	c0001	1422	246	75	56	72	12	29	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	c0002	1422	7	7	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	c0003	1422	5	5	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	c0004	1422	2	2	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	c0005	1422	1	1	0	0	0	0	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS1_chr8_96256902_96341995	0/0	c0006	1422	1	0	0	0	0	1	copy fasta	PTDSS1	chr8	96256902	96341995
PTDSS2_chr11_445279_496399	1/1	c0001	1464	264	87	51	81	13	30	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0002	1464	42	3	8	27	0	4	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0003	1464	17	0	16	0	1	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0004	1464	8	0	5	2	0	1	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0005	1464	7	0	5	0	2	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0006	1464	4	4	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0007	1464	1	0	1	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0008	1464	1	1	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0009	1464	1	1	0	0	0	0	copy fasta	PTDSS2	chr11	445279	496399
PTDSS2_chr11_445279_496399	0/0	c0010	1464	1	0	0	0	0	1	copy fasta	PTDSS2	chr11	445279	496399
PTEN_chr10_87858625_87976930	1/1	c0001	1212	321	78	59	152	8	22	copy fasta	PTEN	chr10	87858625	87976930
PTEN_chr10_87858625_87976930	0/0	c0002	1212	1	0	1	0	0	0	copy fasta	PTEN	chr10	87858625	87976930
PTER_chr10_16432010_16518745	0/1	c0001	1050	264	41	35	150	6	31	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	1/0	c0002	1050	99	35	16	33	5	9	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	c0003	1050	10	9	1	0	0	0	copy fasta	PTER	chr10	16432010	16518745