JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTER_chr10_16432010_16518745	0/0	c0004	1050	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	c0006	1050	1	0	0	1	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	c0007	1050	1	1	0	0	0	0	copy fasta	PTER	chr10	16432010	16518745
PTER_chr10_16432010_16518745	0/0	c0008	1050	1	0	0	0	1	0	copy fasta	PTER	chr10	16432010	16518745
PTF1A_chr10_23187312_23199245	0/0	c0001	987	254	53	38	122	10	31	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	1/1	c0002	987	136	40	34	41	6	13	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	c0003	987	10	0	0	6	0	4	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	c0004	987	3	3	0	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	c0005	987	3	0	0	3	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	c0006	987	2	2	0	0	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	c0007	987	1	0	0	1	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTF1A_chr10_23187312_23199245	0/0	c0008	987	1	0	0	1	0	0	copy fasta	PTF1A	chr10	23187312	23199245
PTGDR2_chr11_60845933_60860950	0/1	c0001	1188	378	83	75	165	15	39	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	1/0	c0002	1188	7	6	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0003	1188	5	0	0	0	1	4	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0004	1191	4	4	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0005	1188	3	0	0	3	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0006	1188	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0007	1188	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0008	1188	1	0	1	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0011	1188	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0012	1188	1	0	0	1	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0013	1188	1	0	0	0	0	1	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR2_chr11_60845933_60860950	0/0	c0014	1188	1	1	0	0	0	0	copy fasta	PTGDR2	chr11	60845933	60860950
PTGDR_chr14_52262698_52281724	1/1	c0001	1080	372	89	67	173	13	28	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0002	1080	32	0	5	18	1	8	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0003	1080	19	1	8	2	4	4	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0004	1080	4	3	1	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0005	1080	3	3	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0006	1080	2	0	1	0	0	1	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0007	1080	1	0	0	0	0	1	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0008	1080	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0009	1080	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0010	1080	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0011	1080	1	0	0	1	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDR_chr14_52262698_52281724	0/0	c0012	1080	1	1	0	0	0	0	copy fasta	PTGDR	chr14	52262698	52281724
PTGDS_chr9_136972504_136986742	0/1	c0001	573	357	79	68	154	13	42	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	1/0	c0002	573	17	15	0	0	1	0	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	0/0	c0003	573	4	0	0	0	0	4	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	0/0	c0004	573	2	0	2	0	0	0	copy fasta	PTGDS	chr9	136972504	136986742
PTGDS_chr9_136972504_136986742	0/0	c0005	573	2	0	0	2	0	0	copy fasta	PTGDS	chr9	136972504	136986742
PTGER1_chr19_14467466_14480354	1/1	c0001	1209	313	45	60	155	13	38	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0002	1209	38	38	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0003	1209	29	2	16	0	5	6	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0004	1209	18	2	4	12	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0005	1209	2	2	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354