JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTGER1_chr19_14467466_14480354	0/0	c0007	1209	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0008	1209	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0009	1197	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0010	1209	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0011	1209	1	0	0	1	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0012	1209	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER1_chr19_14467466_14480354	0/0	c0013	1209	1	1	0	0	0	0	copy fasta	PTGER1	chr19	14467466	14480354
PTGER2_chr14_52309312_52333598	1/1	c0001	1077	356	74	66	164	13	37	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0002	1077	51	13	4	29	0	5	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0003	1077	4	0	3	0	1	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0004	1077	2	0	2	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0005	1077	2	2	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0006	1077	1	0	0	1	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0007	1077	1	1	0	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER2_chr14_52309312_52333598	0/0	c0008	1077	1	0	1	0	0	0	copy fasta	PTGER2	chr14	52309312	52333598
PTGER3_chr1_70965782_71052816	1/1	c0001	1173	331	58	56	164	13	38	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0002	1173	21	16	4	0	1	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0003	1173	7	0	2	5	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0004	1173	6	6	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0005	1173	2	1	1	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0006	1173	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0007	1173	1	0	1	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0008	1173	1	0	0	1	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0009	1173	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER3_chr1_70965782_71052816	0/0	c0010	1124	1	1	0	0	0	0	copy fasta	PTGER3	chr1	70965782	71052816
PTGER4_chr5_40674915_40698735	1/1	c0001	1467	371	66	74	169	14	46	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	c0002	1467	31	22	7	0	2	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	c0003	1467	1	0	1	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	c0004	1467	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	c0005	1467	1	1	0	0	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGER4_chr5_40674915_40698735	0/0	c0006	1467	1	0	0	1	0	0	copy fasta	PTGER4	chr5	40674915	40698735
PTGES2_chr9_128115693_128132729	0/1	c0001	1134	322	66	64	142	13	36	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	c0002	1134	13	1	9	0	1	2	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	1/0	c0003	1134	13	11	0	0	0	1	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	c0004	1134	12	11	1	0	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	c0005	1134	2	0	0	2	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	c0006	1134	2	0	0	2	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	c0007	1134	1	1	0	0	0	0	copy fasta	PTGES2	chr9	128115693	128132729
PTGES2_chr9_128115693_128132729	0/0	c0008	1134	1	0	0	0	0	1	copy fasta	PTGES2	chr9	128115693	128132729
PTGES3L_chr17_42963103_42985080	1/1	c0001	471	286	52	62	116	15	39	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	c0002	471	27	15	8	0	1	3	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	c0003	471	16	16	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	c0004	471	4	4	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	c0005	471	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	c0006	471	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3L_chr17_42963103_42985080	0/0	c0007	471	1	1	0	0	0	0	copy fasta	PTGES3L	chr17	42963103	42985080
PTGES3_chr12_56658349_56693284	1/1	c0001	483	371	90	70	159	16	34	copy fasta	PTGES3	chr12	56658349	56693284
PTGES3_chr12_56658349_56693284	0/0	c0002	483	1	0	0	1	0	0	copy fasta	PTGES3	chr12	56658349	56693284
PTGES_chr9_129733349_129758042	1/1	c0001	459	382	59	74	191	13	43	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	c0002	459	30	17	5	4	1	3	copy fasta	PTGES	chr9	129733349	129758042