JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTGES_chr9_129733349_129758042	0/0	c0003	459	9	8	1	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	c0004	459	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	c0005	459	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	c0006	459	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	c0007	459	1	0	0	1	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGES_chr9_129733349_129758042	0/0	c0008	459	1	1	0	0	0	0	copy fasta	PTGES	chr9	129733349	129758042
PTGFRN_chr1_116904916_116995353	0/0	c0001	2640	106	40	21	29	5	11	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/1	c0002	2640	89	7	26	39	6	10	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0003	2640	45	0	3	38	0	4	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	1/0	c0004	2640	30	8	3	16	2	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0005	2640	11	9	0	1	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0006	2640	4	4	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0007	2640	4	4	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0008	2640	3	2	1	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0009	2640	3	0	0	0	3	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0010	2640	3	3	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0011	2640	2	2	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0012	2640	2	2	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0013	2640	2	2	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0014	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0015	2640	1	0	0	0	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0016	2640	1	0	0	1	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0017	2640	1	0	0	0	0	1	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0018	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0019	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0020	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0021	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0022	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFRN_chr1_116904916_116995353	0/0	c0023	2640	1	1	0	0	0	0	copy fasta	PTGFRN	chr1	116904916	116995353
PTGFR_chr1_78485974_78545701	1/1	c0001	1080	351	72	64	161	13	39	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	c0002	1080	16	16	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	c0003	1080	8	1	4	0	1	2	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	c0004	1080	6	0	0	6	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	c0005	1080	4	0	0	1	0	3	copy fasta	PTGFR	chr1	78485974	78545701
PTGFR_chr1_78485974_78545701	0/0	c0006	1080	1	1	0	0	0	0	copy fasta	PTGFR	chr1	78485974	78545701
PTGIR_chr19_46615468_46630089	1/0	c0001	1161	233	31	43	123	12	23	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/1	c0002	1161	74	3	19	40	0	11	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0003	1161	74	34	16	19	0	5	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0004	1161	8	8	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0005	1161	4	0	0	4	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0006	1161	4	4	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0007	1161	3	3	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0008	1161	3	0	0	3	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0009	1161	3	0	3	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0010	1161	2	2	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0011	1161	1	0	1	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0012	1161	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0013	1161	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0014	1161	1	0	0	0	0	1	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0015	1161	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089