JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTGIR_chr19_46615468_46630089	0/0	c0016	1161	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0017	1161	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0018	1161	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0019	1161	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0020	1161	1	0	0	1	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0021	1161	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIR_chr19_46615468_46630089	0/0	c0022	1161	1	1	0	0	0	0	copy fasta	PTGIR	chr19	46615468	46630089
PTGIS_chr20_49498874_49573137	1/1	c0001	1503	153	32	29	65	5	20	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0002	1503	57	7	13	27	5	5	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0003	1503	45	21	6	16	0	2	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0004	1503	9	6	2	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0005	1503	7	2	0	3	0	2	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0006	1503	6	5	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0007	1503	6	6	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0008	1503	5	0	0	0	0	5	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0009	1503	3	0	0	0	3	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0010	1503	2	2	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0011	1503	2	0	0	0	0	2	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0012	1503	2	0	0	2	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0013	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0014	1503	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0015	1503	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0016	1503	1	0	1	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0017	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0018	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0019	1503	1	0	0	0	1	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0020	1503	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0021	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0022	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0023	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0024	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0025	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0026	1503	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0027	1503	1	0	0	1	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0028	1503	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0029	1503	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0030	1503	1	0	0	0	0	1	copy fasta	PTGIS	chr20	49498874	49573137
PTGIS_chr20_49498874_49573137	0/0	c0031	1503	1	1	0	0	0	0	copy fasta	PTGIS	chr20	49498874	49573137
PTGR1_chr9_111557567_111604647	0/1	c0001	990	237	52	38	108	7	31	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	1/0	c0002	990	165	40	35	71	7	11	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	c0003	990	2	0	0	0	0	2	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	c0004	990	1	0	1	0	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	c0005	990	1	0	0	1	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	c0006	990	1	0	0	1	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR1_chr9_111557567_111604647	0/0	c0007	990	1	0	0	1	0	0	copy fasta	PTGR1	chr9	111557567	111604647
PTGR2_chr14_73846831_73890726	0/0	c0001	1056	218	42	33	102	10	31	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	1/1	c0002	1056	200	51	45	81	8	13	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	c0003	1056	1	0	0	1	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR2_chr14_73846831_73890726	0/0	c0004	1056	1	1	0	0	0	0	copy fasta	PTGR2	chr14	73846831	73890726
PTGR3_chr18_75190113_75214139	1/1	c0001	1134	264	81	41	99	6	35	copy fasta	PTGR3	chr18	75190113	75214139