JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASAH2_chr10_50179861_50256516	0/0	c0014	2343	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0015	2343	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0016	2343	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0017	2343	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0018	2343	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0019	2343	1	0	0	1	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0020	2343	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0021	2343	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0022	2343	1	0	1	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0023	2343	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0024	2343	1	1	0	0	0	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAH2_chr10_50179861_50256516	0/0	c0025	2343	1	0	0	0	1	0	copy fasta	ASAH2	chr10	50179861	50256516
ASAP1_chr8_130047104_130448674	1/0	c0001	3390	142	58	27	40	4	12	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/1	c0002	3390	135	13	18	76	9	18	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0003	3390	11	2	4	5	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0004	3390	5	0	4	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0005	3390	4	3	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0006	3390	3	2	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0007	3390	2	2	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0008	3390	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0009	3390	1	1	0	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0010	3390	1	0	0	0	1	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0011	3390	1	0	0	1	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0012	3390	1	0	1	0	0	0	copy fasta	ASAP1	chr8	130047104	130448674
ASAP1_chr8_130047104_130448674	0/0	c0013	3390	1	0	0	0	0	1	copy fasta	ASAP1	chr8	130047104	130448674
ASAP2_chr2_9201812_9410678	0/0	c0001	3021	67	8	18	27	2	12	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0002	3021	59	20	20	5	6	8	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0003	3021	32	21	1	9	0	1	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0004	3021	18	15	3	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0005	3021	12	2	6	0	0	4	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0006	3021	7	6	1	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0007	3021	6	4	2	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0008	3021	2	0	0	2	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0009	3021	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0010	3021	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0011	3021	1	0	1	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0012	3021	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0013	3021	1	1	0	0	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0014	3021	1	0	0	1	0	0	copy fasta	ASAP2	chr2	9201812	9410678
ASAP2_chr2_9201812_9410678	0/0	c0015	3021	1	0	0	0	0	1	copy fasta	ASAP2	chr2	9201812	9410678
ASAP3_chr1_23423563_23489179	1/1	c0001	2712	307	73	56	129	12	35	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0002	2712	9	1	2	0	2	4	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0003	2712	9	8	1	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0004	2712	7	7	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0005	2712	4	3	0	0	0	1	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0006	2712	2	0	0	2	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0007	2712	1	0	0	1	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0008	2712	1	0	1	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0009	2712	1	1	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0010	2712	1	0	0	1	0	0	copy fasta	ASAP3	chr1	23423563	23489179