JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTGR3_chr18_75190113_75214139	0/0	c0002	1134	148	8	28	94	7	11	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0003	1134	7	0	3	0	1	3	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0004	1134	3	0	0	3	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0005	1134	2	2	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0006	1134	2	0	1	0	0	1	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0007	1134	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0008	1134	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0009	1134	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0010	1134	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0011	1134	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0012	1134	1	1	0	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0013	1134	1	0	0	1	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGR3_chr18_75190113_75214139	0/0	c0014	1134	1	0	1	0	0	0	copy fasta	PTGR3	chr18	75190113	75214139
PTGS1_chr9_122366024_122400703	0/1	c0001	1800	180	25	36	86	6	26	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0002	1800	50	31	14	4	0	1	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0003	1800	23	4	0	18	0	1	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	1/0	c0004	1800	14	0	3	5	1	4	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0005	1800	10	9	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0006	1800	9	8	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0007	1800	9	0	0	0	3	6	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0008	1800	7	7	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0009	1800	5	0	5	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0010	1800	4	3	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0011	1800	3	3	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0012	1800	2	2	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0013	1800	2	1	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0014	1800	2	2	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0015	1800	2	0	1	0	1	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0016	1800	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0017	1800	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0018	1800	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0019	1800	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0020	1800	1	0	0	1	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0021	1800	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0022	1800	1	0	1	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0023	1800	1	0	0	0	1	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0024	1800	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS1_chr9_122366024_122400703	0/0	c0025	1800	1	1	0	0	0	0	copy fasta	PTGS1	chr9	122366024	122400703
PTGS2_chr1_186666791_186685423	1/0	c0001	1815	374	82	72	171	13	35	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/1	c0002	1815	29	1	8	12	3	4	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0003	1815	12	7	0	0	0	5	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0004	1815	4	4	0	0	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0005	1815	4	0	0	4	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0006	1815	4	0	0	4	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0007	1815	2	0	0	2	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0008	1815	2	0	0	2	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0009	1815	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0010	1815	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTGS2_chr1_186666791_186685423	0/0	c0011	1815	1	0	0	1	0	0	copy fasta	PTGS2	chr1	186666791	186685423
PTH1R_chr3_46872721_46908799	0/1	c0001	1782	222	71	46	69	7	28	copy fasta	PTH1R	chr3	46872721	46908799