JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTH1R_chr3_46872721_46908799	1/0	c0002	1782	127	18	18	72	7	11	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	c0003	1782	2	2	0	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	c0004	1782	1	1	0	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	c0005	1782	1	0	0	1	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	c0006	1782	1	0	1	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	c0007	1782	1	0	0	0	0	1	copy fasta	PTH1R	chr3	46872721	46908799
PTH1R_chr3_46872721_46908799	0/0	c0008	1782	1	0	1	0	0	0	copy fasta	PTH1R	chr3	46872721	46908799
PTH2R_chr2_208401792_208499506	0/1	c0001	1653	149	29	17	76	7	19	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	1/0	c0002	1653	84	15	6	47	2	13	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0003	1653	42	30	7	2	2	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0004	1653	5	5	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0005	1653	3	0	2	0	1	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0006	1653	2	2	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0007	1653	2	0	0	2	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0008	1653	2	2	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0009	1653	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0010	1653	1	0	0	1	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0011	1653	1	1	0	0	0	0	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0012	1653	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2R_chr2_208401792_208499506	0/0	c0013	1653	1	0	0	0	0	1	copy fasta	PTH2R	chr2	208401792	208499506
PTH2_chr19_49417419_49428441	1/1	c0001	303	434	84	80	205	15	48	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0002	306	4	3	0	0	1	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0003	303	1	1	0	0	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0004	303	1	1	0	0	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0005	303	1	1	0	0	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0006	303	1	0	0	0	0	1	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0007	303	1	0	0	1	0	0	copy fasta	PTH2	chr19	49417419	49428441
PTH2_chr19_49417419_49428441	0/0	c0008	303	1	0	0	0	0	1	copy fasta	PTH2	chr19	49417419	49428441
PTHLH_chr12_27953084_27977733	1/1	c0001	534	454	94	76	227	14	41	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	c0002	534	1	0	0	0	0	1	copy fasta	PTHLH	chr12	27953084	27977733
PTHLH_chr12_27953084_27977733	0/0	c0003	534	1	0	0	1	0	0	copy fasta	PTHLH	chr12	27953084	27977733
PTH_chr11_13487054_13500997	1/1	c0001	348	375	89	63	173	15	33	copy fasta	PTH	chr11	13487054	13500997
PTH_chr11_13487054_13500997	0/0	c0002	348	44	0	7	21	3	13	copy fasta	PTH	chr11	13487054	13500997
PTH_chr11_13487054_13500997	0/0	c0003	348	5	5	0	0	0	0	copy fasta	PTH	chr11	13487054	13500997
PTK2B_chr8_27320552_27464386	0/0	c0001	3030	68	28	14	18	3	5	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	1/0	c0002	3030	62	7	8	41	2	3	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/1	c0003	3030	58	8	18	24	3	4	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0004	3030	31	0	6	18	1	6	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0005	3030	19	0	8	8	0	3	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0006	3030	19	13	3	2	1	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0007	3030	11	5	6	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0008	3030	9	9	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0009	3030	8	1	1	6	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0010	3030	8	8	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0011	3030	6	0	1	5	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0012	3030	4	0	3	0	0	1	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0013	3030	3	2	1	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0014	3030	2	0	2	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0015	3030	2	0	0	2	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0016	3030	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386