JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTK2B_chr8_27320552_27464386	0/0	c0017	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0018	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0019	3030	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0020	3030	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0021	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0022	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0023	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0024	3030	1	0	1	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0025	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0026	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0027	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0028	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0029	3030	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0030	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0031	3030	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0032	3030	1	1	0	0	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2B_chr8_27320552_27464386	0/0	c0033	3030	1	0	0	1	0	0	copy fasta	PTK2B	chr8	27320552	27464386
PTK2_chr8_140652900_141006282	1/1	c0001	3291	149	29	40	51	5	22	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0002	3291	73	10	9	43	1	10	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0003	3291	58	43	2	12	1	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0004	3291	2	0	2	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0005	3291	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0006	3291	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0007	3291	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0008	3291	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0009	3291	1	0	0	1	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0010	3291	1	0	0	0	1	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0011	3291	1	0	1	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK2_chr8_140652900_141006282	0/0	c0012	3291	1	1	0	0	0	0	copy fasta	PTK2	chr8	140652900	141006282
PTK6_chr20_63523001_63542376	1/1	c0001	1356	223	3	71	99	18	30	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0002	1356	52	48	4	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0003	1356	31	29	1	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0004	1356	14	0	0	0	0	14	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0005	1356	7	0	0	7	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0006	1356	4	4	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0007	1356	2	2	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0008	1356	2	2	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0010	1356	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0011	1356	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0012	1356	1	0	0	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0013	1356	1	0	0	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0014	1356	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0015	1356	1	1	0	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0016	1356	1	0	0	1	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK6_chr20_63523001_63542376	0/0	c0017	1356	1	0	1	0	0	0	copy fasta	PTK6	chr20	63523001	63542376
PTK7_chr6_43071314_43166715	1/0	c0001	3213	155	30	29	76	2	17	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0002	3213	78	33	22	12	2	9	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/1	c0003	3213	7	4	1	1	0	0	copy fasta	PTK7	chr6	43071314	43166715
PTK7_chr6_43071314_43166715	0/0	c0004	3213	6	6	0	0	0	0	copy fasta	PTK7	chr6	43071314	43166715