JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPA_chr9_129106415_129153946	1/1	c0001	972	282	83	50	103	14	30	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	c0002	972	40	0	3	31	0	6	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	c0003	972	5	5	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	c0004	972	3	0	3	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	c0005	972	2	2	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPA_chr9_129106415_129153946	0/0	c0006	972	2	2	0	0	0	0	copy fasta	PTPA	chr9	129106415	129153946
PTPDC1_chr9_94079464_94114853	1/1	c0001	2427	361	68	67	173	12	39	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0002	2427	25	0	0	25	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0003	2427	7	7	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0004	2427	6	6	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0005	2427	3	3	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0006	2427	2	0	0	0	1	1	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0007	2427	1	0	0	0	0	1	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0008	2427	1	0	0	0	0	1	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0009	2427	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0010	2427	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0011	2427	1	0	0	1	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0012	2427	1	0	0	0	1	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0013	2427	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0014	2427	1	0	1	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0015	2427	1	0	0	1	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPDC1_chr9_94079464_94114853	0/0	c0016	2427	1	1	0	0	0	0	copy fasta	PTPDC1	chr9	94079464	94114853
PTPMT1_chr11_47560599_47578461	1/1	c0001	606	391	81	72	182	14	40	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	c0002	606	4	4	0	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPMT1_chr11_47560599_47578461	0/0	c0003	606	1	1	0	0	0	0	copy fasta	PTPMT1	chr11	47560599	47578461
PTPN11_chr12_112413947_112514918	1/1	c0001	1782	287	73	46	133	6	27	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	c0002	1782	11	11	0	0	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	c0003	1782	1	0	0	0	0	1	copy fasta	PTPN11	chr12	112413947	112514918
PTPN11_chr12_112413947_112514918	0/0	c0004	1782	1	0	0	1	0	0	copy fasta	PTPN11	chr12	112413947	112514918
PTPN12_chr7_77532295_77645069	0/1	c0001	2343	123	52	14	41	7	8	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	c0002	2343	112	21	24	51	3	13	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	1/0	c0003	2343	65	12	16	18	5	13	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	c0004	2343	6	0	3	0	1	2	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	c0005	2343	2	0	2	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	c0006	2343	1	0	1	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN12_chr7_77532295_77645069	0/0	c0007	2343	1	1	0	0	0	0	copy fasta	PTPN12	chr7	77532295	77645069
PTPN13_chr4_86589315_86820161	0/0	c0001	7458	50	0	12	31	5	2	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/1	c0002	7458	34	22	6	5	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0003	7458	33	2	8	19	2	2	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	1/0	c0004	7458	26	2	4	17	2	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0005	7458	8	0	6	1	0	1	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0006	7458	6	6	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0007	7458	4	4	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0008	7458	4	0	0	4	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0009	7458	3	0	1	2	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0010	7458	3	3	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0011	7458	3	0	0	3	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0012	7458	2	0	0	2	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0013	7458	2	1	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0014	7458	2	2	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161