JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPN13_chr4_86589315_86820161	0/0	c0015	7458	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0016	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0017	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0018	7458	1	0	0	1	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0019	7458	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0020	7458	1	0	0	0	0	1	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0021	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0022	7458	1	0	0	1	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0023	7458	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0024	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0025	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0026	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0027	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0028	7458	1	0	0	0	1	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0029	7458	1	0	1	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0030	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0031	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN13_chr4_86589315_86820161	0/0	c0032	7458	1	1	0	0	0	0	copy fasta	PTPN13	chr4	86589315	86820161
PTPN14_chr1_214343700_214556602	0/1	c0001	3564	161	46	27	61	7	19	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	1/0	c0002	3564	53	2	15	28	3	4	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0003	3564	15	13	2	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0004	3564	5	5	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0005	3564	5	4	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0006	3564	4	2	1	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0007	3564	3	3	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0008	3564	3	3	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0009	3564	2	1	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0010	3564	2	0	0	1	1	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0011	3564	2	1	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0012	3564	2	0	0	0	1	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0013	3564	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0014	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0015	3564	1	0	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0016	3564	1	0	0	0	0	1	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0017	3564	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0018	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0019	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0020	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0021	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0022	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0023	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0024	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0025	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0026	3564	1	0	1	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN14_chr1_214343700_214556602	0/0	c0027	3564	1	1	0	0	0	0	copy fasta	PTPN14	chr1	214343700	214556602
PTPN18_chr2_130351056_130380405	1/1	c0001	1383	207	32	37	95	11	30	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0002	1377	66	12	16	28	5	5	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0003	1377	32	1	0	29	0	2	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0004	1377	24	22	2	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0005	1377	15	14	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405