JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPN18_chr2_130351056_130380405	0/0	c0006	1377	7	6	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0007	1383	7	0	0	7	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0008	1377	5	4	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0009	1377	4	4	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0010	1377	2	0	0	2	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0011	1383	2	2	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0012	1377	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0013	1377	1	0	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0014	1383	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0015	1383	1	0	1	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0016	1377	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0017	1377	1	1	0	0	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0018	1383	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0019	1383	1	0	0	1	0	0	copy fasta	PTPN18	chr2	130351056	130380405
PTPN18_chr2_130351056_130380405	0/0	c0020	1383	1	0	0	0	0	1	copy fasta	PTPN18	chr2	130351056	130380405
PTPN1_chr20_50505383_50590241	1/1	c0001	1308	256	54	69	98	7	26	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0002	1308	56	12	9	29	2	4	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0003	1308	8	8	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0004	1308	7	7	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0005	1308	3	3	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0006	1308	2	2	0	0	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0007	1308	1	0	0	1	0	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0008	1308	1	0	0	0	0	1	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0009	1308	1	0	0	0	0	1	copy fasta	PTPN1	chr20	50505383	50590241
PTPN1_chr20_50505383_50590241	0/0	c0010	1308	1	0	0	0	1	0	copy fasta	PTPN1	chr20	50505383	50590241
PTPN20_chr10_46906428_47007322	0/1	c0001	1263	256	54	44	111	15	31	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0002	1263	20	1	0	17	0	2	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	1/0	c0003	1263	19	1	10	0	3	4	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0004	1263	7	6	1	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0005	1263	2	0	2	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0006	1263	2	0	0	2	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0007	1263	1	0	0	1	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0008	1226	1	1	0	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0009	1263	1	0	0	1	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0010	1263	1	0	1	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0011	1263	1	1	0	0	0	0	copy fasta	PTPN20	chr10	46906428	47007322
PTPN20_chr10_46906428_47007322	0/0	c0012	1263	1	0	0	0	0	1	copy fasta	PTPN20	chr10	46906428	47007322
PTPN21_chr14_88460778_88560007	1/1	c0001	3525	194	34	35	98	8	17	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0002	3525	98	16	22	46	5	9	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0003	3525	10	0	0	3	1	6	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0004	3525	10	9	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0005	3525	7	6	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0006	3525	4	4	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0007	3525	3	3	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0008	3525	3	3	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0009	3525	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0010	3525	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0011	3525	2	0	0	2	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0012	3525	2	2	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0013	3525	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007