JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPN21_chr14_88460778_88560007	0/0	c0014	3525	1	0	0	0	1	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0015	3525	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0016	3525	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0017	3525	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0018	3525	1	0	1	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0019	3525	1	0	0	0	0	1	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0020	3525	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0021	3525	1	0	0	1	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0022	3525	1	1	0	0	0	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN21_chr14_88460778_88560007	0/0	c0023	3525	1	0	0	0	1	0	copy fasta	PTPN21	chr14	88460778	88560007
PTPN22_chr1_113808811_113876712	0/1	c0001	2424	324	68	56	151	13	35	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	1/0	c0002	2424	8	2	2	0	1	2	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0003	2424	5	0	5	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0004	2424	4	0	2	0	0	2	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0005	2424	3	3	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0006	2427	3	3	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0007	2424	2	0	0	2	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0008	2424	2	0	0	0	0	2	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0009	2424	1	0	0	1	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0010	2424	1	0	0	0	0	1	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0011	2424	1	1	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0012	2424	1	0	0	1	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0013	2424	1	0	1	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0014	2424	1	1	0	0	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN22_chr1_113808811_113876712	0/0	c0015	2424	1	0	0	1	0	0	copy fasta	PTPN22	chr1	113808811	113876712
PTPN23_chr3_47376021_47418435	0/1	c0001	4911	65	12	13	29	3	7	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0002	4911	57	4	16	24	3	10	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0003	4912	37	6	8	19	0	4	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0004	4912	35	4	7	19	1	4	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0005	4911	23	21	1	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0006	4911	15	0	3	12	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0007	4913	11	0	5	5	0	1	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0008	4912	11	10	1	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0009	4912	9	0	2	7	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0010	4912	9	0	2	6	1	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0011	4913	8	2	2	2	0	2	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0012	4912	7	7	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	1/0	c0013	4911	5	4	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0014	4911	2	0	0	0	0	2	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0015	4912	2	0	0	2	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0016	4912	2	1	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0017	4912	2	0	0	1	0	1	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0018	4911	2	0	0	2	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0019	4912	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0020	4884	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0021	4911	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0022	4912	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0023	4894	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0024	4911	1	0	1	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0025	4912	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435