JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPN23_chr3_47376021_47418435	0/0	c0026	4912	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0027	4911	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0028	4893	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0029	4913	1	0	0	0	0	1	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0030	4913	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0031	4913	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0032	4884	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0033	4895	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0034	4911	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0035	4911	1	0	0	0	0	1	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0036	4911	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0037	4911	1	0	1	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0038	4911	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0039	4911	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0040	4912	1	0	0	1	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0041	4911	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0042	4913	1	0	0	0	0	1	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0043	4911	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0044	4911	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0045	4913	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0046	4911	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0047	4911	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN23_chr3_47376021_47418435	0/0	c0048	4912	1	1	0	0	0	0	copy fasta	PTPN23	chr3	47376021	47418435
PTPN2_chr18_12787152_12889237	1/1	c0001	1248	360	89	66	144	16	43	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	c0002	1248	5	3	2	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	c0003	1248	4	2	2	0	0	0	copy fasta	PTPN2	chr18	12787152	12889237
PTPN2_chr18_12787152_12889237	0/0	c0004	1248	1	0	0	0	0	1	copy fasta	PTPN2	chr18	12787152	12889237
PTPN3_chr9_109370700_109503307	1/1	c0001	2742	150	33	30	64	8	13	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0002	2742	92	37	18	24	4	9	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0003	2742	14	0	0	14	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0004	2742	9	0	3	6	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0005	2742	5	0	3	2	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0006	2742	4	4	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0007	2742	2	1	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0008	2742	2	0	0	2	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0009	2742	2	1	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0010	2742	1	0	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0011	2742	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0012	2742	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0013	2742	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0014	2732	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0015	2742	1	1	0	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0016	2742	1	0	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0017	2742	1	0	0	1	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0018	2742	1	0	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN3_chr9_109370700_109503307	0/0	c0019	2742	1	0	1	0	0	0	copy fasta	PTPN3	chr9	109370700	109503307
PTPN4_chr2_119754922_119989899	1/1	c0001	2781	232	69	48	80	6	27	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0002	2781	10	9	1	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0003	2781	3	0	3	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0004	2781	2	0	0	2	0	0	copy fasta	PTPN4	chr2	119754922	119989899