JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPN4_chr2_119754922_119989899	0/0	c0005	2781	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0006	2781	1	0	0	0	0	1	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0007	2781	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0008	2781	1	1	0	0	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN4_chr2_119754922_119989899	0/0	c0009	2781	1	0	0	1	0	0	copy fasta	PTPN4	chr2	119754922	119989899
PTPN5_chr11_18722928_18796798	1/0	c0001	1698	167	62	18	70	5	11	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/1	c0002	1698	103	2	33	47	6	14	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0003	1698	99	29	15	41	6	8	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0004	1698	4	0	2	0	1	1	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0005	1698	3	0	0	3	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0006	1698	2	2	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0007	1698	1	1	0	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0008	1698	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0009	1698	1	0	1	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0010	1698	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0011	1698	1	0	0	0	0	1	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0012	1698	1	0	0	0	0	1	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0013	1698	1	0	1	0	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0014	1698	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0015	1698	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN5_chr11_18722928_18796798	0/0	c0016	1698	1	0	0	1	0	0	copy fasta	PTPN5	chr11	18722928	18796798
PTPN6_chr12_6946356_6966316	0/0	c0001	1788	342	73	60	154	11	44	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	1/0	c0002	1788	11	4	5	0	1	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0003	1788	8	8	0	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0004	1788	5	0	0	4	0	1	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0005	1788	5	4	1	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0006	1788	3	1	2	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0007	1788	3	3	0	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0008	1788	1	0	1	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0009	1788	1	0	0	1	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0010	1788	1	0	1	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0011	1788	1	0	0	1	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0012	1788	1	0	0	1	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0013	1788	1	1	0	0	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0014	1788	1	0	0	1	0	0	copy fasta	PTPN6	chr12	6946356	6966316
PTPN6_chr12_6946356_6966316	0/0	c0015	1788	1	0	0	0	0	1	copy fasta	PTPN6	chr12	6946356	6966316
PTPN7_chr1_202142016_202165602	0/0	c0001	1083	401	91	77	167	18	48	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0002	1083	42	1	9	32	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0003	1083	3	3	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0004	1083	3	3	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0005	1083	1	1	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0006	1083	1	1	0	0	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0007	1093	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0008	1083	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN7_chr1_202142016_202165602	0/0	c0009	1083	1	0	0	1	0	0	copy fasta	PTPN7	chr1	202142016	202165602
PTPN9_chr15_75458251_75584315	1/1	c0001	1782	318	75	54	145	10	32	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	c0002	1782	2	0	0	2	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	c0003	1782	1	0	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	c0004	1782	1	0	1	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	c0005	1782	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315