JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ASAP3_chr1_23423563_23489179	0/0	c0011	2712	1	0	0	1	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0012	2712	1	0	0	0	1	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0013	2712	1	1	0	0	0	0	copy fasta	ASAP3	chr1	23423563	23489179
ASAP3_chr1_23423563_23489179	0/0	c0014	2712	1	0	0	0	1	0	copy fasta	ASAP3	chr1	23423563	23489179
ASB10_chr7_151170698_151192250	1/0	c0001	1404	164	16	38	74	7	28	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/1	c0002	1404	83	35	19	12	7	9	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0003	1404	48	3	4	41	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0004	1404	33	7	11	11	3	1	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0005	1404	31	0	0	31	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0006	1404	22	12	3	5	0	2	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0007	1404	11	0	0	11	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0008	1404	6	5	1	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0009	1404	5	4	1	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0010	1404	4	1	0	0	0	3	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0011	1404	4	0	0	4	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0012	1404	3	3	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0013	1404	3	0	0	3	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0014	1404	3	0	0	3	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0015	1404	2	1	0	0	0	1	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0016	1404	2	0	0	0	0	2	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0017	1404	2	2	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0018	1404	1	0	0	0	0	1	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0019	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0020	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0021	1404	1	0	1	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0022	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0023	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0024	1404	1	0	0	0	0	1	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0025	1404	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0026	1404	1	0	0	0	1	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0027	1404	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0028	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0029	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0030	1404	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0031	1404	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0032	1404	1	0	0	1	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB10_chr7_151170698_151192250	0/0	c0033	1404	1	1	0	0	0	0	copy fasta	ASB10	chr7	151170698	151192250
ASB11_chrX_15276697_15320640	1/0	c0001	972	291	69	55	125	12	29	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0002	972	5	5	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/1	c0003	972	3	0	1	0	1	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0004	972	2	2	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0005	972	1	0	0	0	0	1	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0006	972	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0007	972	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0008	972	1	1	0	0	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB11_chrX_15276697_15320640	0/0	c0009	973	1	0	0	1	0	0	copy fasta	ASB11	chrX	15276697	15320640
ASB12_chrX_64219194_64235607	1/1	c0001	957	255	56	51	108	11	27	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0002	957	16	15	0	0	0	1	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0003	957	5	0	0	5	0	0	copy fasta	ASB12	chrX	64219194	64235607
ASB12_chrX_64219194_64235607	0/0	c0004	957	4	4	0	0	0	0	copy fasta	ASB12	chrX	64219194	64235607