JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPN9_chr15_75458251_75584315	0/0	c0006	1782	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	c0007	1782	1	1	0	0	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPN9_chr15_75458251_75584315	0/0	c0008	1782	1	0	0	1	0	0	copy fasta	PTPN9	chr15	75458251	75584315
PTPRA_chr20_2868481_3043669	0/0	c0001	2409	123	1	20	84	6	12	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0002	2409	85	31	9	38	2	5	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	1/1	c0003	2409	64	14	17	14	6	11	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0004	2409	27	1	12	13	0	1	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0005	2409	20	20	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0006	2409	10	1	1	7	0	1	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0007	2409	8	6	2	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0008	2409	7	0	3	4	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0009	2409	2	0	0	0	0	2	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0010	2409	2	2	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0011	2409	1	1	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0012	2409	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0013	2409	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0014	2409	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0015	2409	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0016	2409	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0017	2409	1	1	0	0	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRA_chr20_2868481_3043669	0/0	c0018	2409	1	0	0	1	0	0	copy fasta	PTPRA	chr20	2868481	3043669
PTPRB_chr12_70510870_70642429	0/1	c0001	6648	20	2	6	7	1	3	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0002	6648	20	5	8	6	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0003	6648	19	10	2	7	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0004	6648	13	1	3	7	0	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0005	6648	12	0	3	6	2	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0006	6648	10	1	1	7	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0007	6648	8	2	1	5	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0008	6648	7	1	4	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0009	6648	7	0	0	6	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0010	6648	7	2	0	4	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0011	6648	7	3	2	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0012	6648	7	0	1	6	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0013	6648	6	2	1	3	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0014	6648	6	1	0	4	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0015	6648	5	0	0	4	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0016	6648	5	2	0	1	0	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0017	6648	5	0	0	5	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0018	6648	4	0	0	4	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0019	6648	4	3	0	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	1/0	c0020	6648	4	0	3	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0021	6648	3	2	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0022	6648	3	0	2	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0023	6648	3	0	0	3	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0024	6648	3	1	0	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0025	6648	3	0	0	3	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0026	6648	3	1	0	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0027	6648	3	0	0	3	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0028	6648	3	1	2	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0029	6648	3	1	1	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429