JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRB_chr12_70510870_70642429	0/0	c0030	6648	3	2	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0031	6648	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0032	6648	2	0	1	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0033	6648	2	0	1	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0034	6648	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0035	6648	2	1	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0036	6648	2	0	0	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0037	6648	2	0	0	0	0	2	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0038	6648	2	1	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0039	6648	2	0	0	2	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0040	6648	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0041	6648	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0042	6648	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0043	6648	2	1	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0044	6648	2	2	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0045	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0046	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0047	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0048	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0049	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0050	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0051	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0052	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0053	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0054	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0055	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0056	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0057	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0058	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0059	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0060	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0061	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0062	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0063	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0064	6648	1	0	0	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0065	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0066	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0067	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0068	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0069	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0070	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0071	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0072	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0073	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0074	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0075	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0076	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0077	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0078	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0079	6648	1	0	0	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429