JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRB_chr12_70510870_70642429	0/0	c0080	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0081	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0082	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0083	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0084	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0085	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0086	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0087	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0088	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0089	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0090	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0091	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0092	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0093	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0094	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0095	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0096	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0097	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0098	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0099	6648	1	0	0	0	1	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0100	6648	1	0	1	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0101	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0102	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0103	6648	1	0	0	1	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0104	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0105	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0106	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0107	6648	1	0	0	0	0	1	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0108	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0109	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRB_chr12_70510870_70642429	0/0	c0110	6648	1	1	0	0	0	0	copy fasta	PTPRB	chr12	70510870	70642429
PTPRCAP_chr11_67430510_67442682	1/1	c0001	621	364	91	63	156	15	37	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	c0002	621	6	0	1	4	0	1	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	c0003	621	5	0	0	5	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	c0004	621	1	1	0	0	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	c0005	621	1	0	0	1	0	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRCAP_chr11_67430510_67442682	0/0	c0006	621	1	0	0	0	1	0	copy fasta	PTPRCAP	chr11	67430510	67442682
PTPRC_chr1_198634040_198762476	1/1	c0001	3921	172	33	43	69	7	18	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0002	3921	62	25	19	12	1	5	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0003	3921	29	1	4	22	0	2	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0004	3921	4	0	1	0	2	1	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0005	3921	4	4	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0006	3921	3	3	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0007	3921	3	0	3	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0008	3921	3	0	1	2	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0009	3921	2	0	0	2	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0010	3921	2	2	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0011	3921	2	2	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0012	3921	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0013	3921	1	0	1	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476