JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRC_chr1_198634040_198762476	0/0	c0014	3921	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0015	3921	1	0	0	1	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0016	3921	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0017	3921	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0018	3921	1	0	1	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0019	3921	1	0	1	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0020	3921	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRC_chr1_198634040_198762476	0/0	c0021	3921	1	1	0	0	0	0	copy fasta	PTPRC	chr1	198634040	198762476
PTPRD_chr9_8309246_10618002	0/0	c0001	5739	9	6	2	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0002	5739	6	4	2	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0003	5739	3	2	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0004	5739	2	1	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0005	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0006	5739	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0007	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0008	5739	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0009	5739	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0010	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0011	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0012	5739	1	0	0	0	0	1	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0013	5739	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0014	5739	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0015	5739	1	0	1	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0016	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0017	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRD_chr9_8309246_10618002	0/0	c0018	5739	1	1	0	0	0	0	copy fasta	PTPRD	chr9	8309246	10618002
PTPRE_chr10_127902103_128090855	1/1	c0001	2103	211	58	43	67	10	31	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0002	2103	41	16	7	13	0	5	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0003	2103	19	8	8	1	2	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0004	2103	12	0	0	12	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0005	2103	7	1	2	4	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0006	2103	2	2	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0007	2103	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0008	2103	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0009	2103	1	0	0	0	0	1	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0010	2103	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0011	2103	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0012	2103	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0013	2103	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0014	2103	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0015	2103	1	0	0	1	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0016	2103	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0017	2103	1	1	0	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRE_chr10_127902103_128090855	0/0	c0018	2103	1	0	1	0	0	0	copy fasta	PTPRE	chr10	127902103	128090855
PTPRF_chr1_43525883_43628666	1/0	c0001	5724	9	0	5	0	0	3	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	c0002	5724	6	5	1	0	0	0	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	c0003	5724	1	0	0	0	0	1	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	c0004	5724	1	1	0	0	0	0	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	c0005	5724	1	0	0	1	0	0	copy fasta	PTPRF	chr1	43525883	43628666
PTPRF_chr1_43525883_43628666	0/0	c0006	5724	1	0	0	1	0	0	copy fasta	PTPRF	chr1	43525883	43628666