JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PTPRG_chr3_61556571_62302609	0/0	c0001	4338	47	22	13	5	3	4	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0002	4338	9	2	3	0	1	3	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0003	4338	8	2	0	3	0	3	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0004	4338	7	3	1	0	0	3	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0005	4338	4	3	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0006	4338	4	4	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0007	4338	2	2	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0008	4338	2	2	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0009	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0010	4338	1	0	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0011	4338	1	0	1	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0012	4338	1	0	0	0	0	1	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0013	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0014	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0015	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0016	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0017	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0018	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRG_chr3_61556571_62302609	0/0	c0019	4338	1	1	0	0	0	0	copy fasta	PTPRG	chr3	61556571	62302609
PTPRH_chr19_55176247_55214501	1/0	c0001	3348	62	2	11	40	3	5	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0002	3348	51	4	17	28	0	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0003	3348	17	2	4	7	0	4	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/1	c0004	3348	16	1	2	11	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0005	3348	10	2	6	1	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0006	3348	10	8	0	0	1	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0007	3348	10	1	0	6	0	3	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0008	3348	8	0	0	7	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0009	3348	7	0	0	5	1	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0010	3348	6	0	2	0	3	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0011	3348	6	5	1	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0012	3348	6	2	0	0	2	2	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0013	3348	5	5	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0014	3348	5	3	1	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0015	3348	5	0	4	0	1	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0016	3348	4	0	1	0	0	3	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0017	3348	4	0	3	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0018	3348	4	0	0	1	0	3	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0019	3348	3	3	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0020	3348	3	0	0	2	0	1	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0021	3348	3	1	2	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0022	3348	3	0	0	3	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0023	3348	3	0	0	3	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0024	3348	3	0	0	3	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0025	3348	3	0	0	3	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0026	3348	3	0	0	3	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0027	3348	3	0	3	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0028	3348	3	3	0	0	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0029	3348	2	1	0	1	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0030	3348	2	0	0	2	0	0	copy fasta	PTPRH	chr19	55176247	55214501
PTPRH_chr19_55176247_55214501	0/0	c0031	3348	2	0	1	0	0	1	copy fasta	PTPRH	chr19	55176247	55214501